Results for "fast mapping"
Blogs
List of bioinformatics workflow management tools !
Here are list of Workflow Managers BigDataScript – A cross-system scripting language for worki...Python that aims to reduce the complexity of creating workflows by providing a fast an...1153 days ago
Tools to detect synteny blocks regions among multiple genomes
The synteny block (which etymologically means “on...), SyMAP (http://www.symapdb.org/) SyMAP (Synteny Mapping and Analysis Program) v4.0 is...uitable image of syntenic relationships or physical mapping can be obtained. http://www.a...2621 days ago
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Bookmarks
Next Generation Sequencing (NGS) Tutorials
Institute of computational biomedicine, Cornell University provide an NGS workshop...OI: 10.1093/bioinformatics/btr441 ngs_backbone: a pipeline for read cleaning, mapping and SNP calling using Next Ge...3498 days ago
Latest paper on comparison of mapping tools
...V. Catalyurek "Benchmarking short sequence mapping tools" BMC Bioinformatics,...rdjournals.org/content/28/24/3169 Some new Mapping tool links: GSNAP http:/...map/ RMAP http://rulai.cshl.edu/rmap/ mrsFAST http://mrsfast.sourceforge.net/Home http://sou...3907 days ago
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Files
Bioinformatics approach to Boar Taint
Meat products obtained from intact male pigs often produce offensive smell...ng SNPs haplotypes in close linkage disequilibrium with QTLs and fine mapping of QTLs through association mapping of genotyped SNPs. &nb...3800 days ago
- Randomness and Probability Randomness and probability are two differnet concepts:...s the object to be measured by probability. For example, probability is a mapping from randomness to the real n...
1625 days ago
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Pages
Bio++ : C Language libraries for your biological need
...implementations. Support for alignments.Various I/O formats supported: Fasta, Mase, CLustal, Phylip, DCSE...ral states reconstructions: Marginal likelihood.(Weighted) substitution mapping.Sequences simulation under an...3958 days ago
Genome Assembly Tools and Software - PART2 !!
...nd high-coverage genomes from fastq files in a short time and produ...e-assembled contig sequences (FASTA) and NGS paired-read data (FAST...IMAGE 2.4.1 – Iterative Mapping and Assembly for Gap Eliminat...ms into contigs. It is a very fast and accurate DNA sequence assemb...2696 days ago
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Top-level pages
- The completion of the first human genome drafts was just a start of the modern DNA sequencing era which resulted...l machanism at genomic level, speed up the genomic sequencing projects. In the fast gr...
3959 days ago
- ...organisms and fine-scale genetic mapping efforts. The field also in...techniques of sequencing, genome mapping, data storage, and bioinforma...a meeting held in Maryland on the mapping of the human genome in 1986.T...oding DN Glimmer HMM A fast and accurate gene finder based o...
3953 days ago
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Wire posts
News
- In current era, we are handling huge amount of genomics data, and analysing it to make some biological sense out...tions over them. Massimiliano Orsini and Simone Carcangiu develope a new and fast fast pa...
3900 days ago
- This webinar will describe an R based approach to considerably speed GWAS computation time on a notebook book computer. More http://www.extension.org/pages/68354/upcoming-webinar:-fast-se...
3900 days ago
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Opportunity posts
Ph.D. Fellowship (Computational Biology/Bioinformatics) : Cork, Ireland : Cork, Ireland
Ph.D. Fellowship (18,000 euro/pa, plus tuition fees at the EU students rate) is ava...some profiling data. Ribosome profiling (ribo-seq) is a technology that allows mapping positions of the ribosomes on...3927 days ago
National Training on Bioinformatics Computational Tools for Microbial Research Nov 19 to 30, 2013
Agricultural research in modern scientific arena is being represented by proper integr...re complexities of biology in nature. In the era of fast accumulating biological data...ientists/researchers in this most emerging area and fast de...3884 days ago
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ResearchLabs posts
- Melanie Bahlo is an applied statistician working in the areas of statis...tics and population genetics. Her main area of research is linkage mapping, in humans and mice. Research Area: Mapping loci in ENU mutants in mice i...
3959 days ago
- Roslin Bioinformatics Group The Law group provides internal Institute-specific d...national animal science community, particularly tools and resources for genome mapping. Head: Andy Law. Members:...
3824 days ago
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Fun
The Best Bioinformatics / Computational Biology Quotes
Bioinformatician are not anti-social; We are just genome friendly. Bioinformatician would love to change the b...lete it ! Bad or missing mouse genome. Spank the cat? (Y/N) Genome make very fast, v...3731 days ago
Video
- Air date: Wednesday, January 04, 2012, 3:00:00 PM Time...Botstein and three colleagues proposed a method for mapping human genes that laid the gro...he Human Genome Project. The basic principle of the mapping scheme was to develop, by rec...
3884 days ago
Dr. Ken Buetow: IS & Personalized Medicine Lecture-Part 1
...rehensive molecular characterization. Nowhere is this change happening faster than in the field of cancer...udies developing and applying linkage disequilibrium methods as genetic mapping tools. The laboratory also d...3881 days ago
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Bio-Scripts
- #!/usr/local/bin/perl -w # NOTE: YOU MUST CHANGE THE LINE ABOVE TO POINT TO # THE FU...second sequence with option -j. is a fasta format file from which the...is is the only required parameter. is a fasta f...
2704 days ago
Create genome scaffolding with Perl
#!/usr/bin/perl use warnings; use strict; use English; use Pod::Usage; ## uses pod documentation in usage code use Getopt::Long qw(:config auto_version auto_he...2319 days ago
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Tags
MECAT: fast mapping, error correction, and de novo assembly for single-molecule sequencing reads
MECAT is an ultra-fast Mapping, Error Correction and de novo Assembly Tools for single molecula sequencing (SMRT) reads. MECAT employs novel alignment and error correction algorithms that are much more efficient than the state of art of aligners and error correction tools. MECAT can be used for e...Tags: MECAT, fast mapping, error correction, de novo, assembly, genome, single-molecule, sequencing, reads, Tools
2197 days ago
Comments
Comment on "LAMSA: fast split read alignment with long approximate matches"
...ery. [300] -k --bwt-kmer [INT] Length of BWT-seed. [19] -f --fastest Use GEM-mapper's fastest mode(--fast-mapping=0). [false] Scoring optio...ing for supplementary alignment. [false] -C --comment Append FASTQ comment to SAM output. [false]...2133 days ago
