IQ-TREE: Efficient software for phylogenomic inference
...een 62.2% and 87.1% of the studied alignments, thus efficiently exploring the tree-space. If we use the IQ-TREE stopping rule, RAxML and PhyML are faster in 75.7% and 47.1% of the DNA...1902 days ago
heatmaply: popular graphical method for visualizing high-dimensional data
...ed by choosing plot_method = "plotly" instead of the default plot_method = "ggplot". This interface can provide smaller objects and faster rendering to disk in many cas...1575 days ago
MALVA: Genotyping by Mapping-free ALlele Detection of Known VAriants
...rectly more indels than the most widely adopted genotyping pipelines Mapping-free approaches are as accurate as alignment-based ones, while being faster More at https://www.sci...1558 days ago
medaka: Sequence correction provided by ONT Research
...outperforms graph-based methods operating on basecalled data, and can be competitive with state-of-the-art signal-based methods, whilst being much faster.1446 days ago
1395 days ago
URMAP, an ultra-fast read mapper
URMAP, a new read mapping algorithm. URMAP is an order of magnitude faster than BWA with comparable accuracy on several validation tests. On a Genome in a Bottle (GIAB) variant callin...1282 days ago
MMseqs2: ultra fast and sensitive sequence search and clustering suite
...via cygwin) Windows. The software is designed to run on multiple cores and servers and exhibits very good scalability. MMseqs2 can run 10000 times faster than BLAST. At 100 times its...1202 days ago
MMseqs2: ultra fast and sensitive sequence search and clustering suite
...via cygwin) Windows. The software is designed to run on multiple cores and servers and exhibits very good scalability. MMseqs2 can run 10000 times faster than BLAST. At 100 times its...941 days ago
605 days ago