Results for "file"

Blogs

  • Basic command-line to run BLAST

    ...the first part of the human and cow protein files - there are 24 files total for human. The databa...T needs to do some pre-work on the database file prior to searching. This help...so gives the option of saving the text to a file. blastp -query cow.s...

    2258 days ago

  • Insert data through ajax into MySql database.

    ...ugh ajax into MySql database.1. Create form.php and copy below code into file. <script type="text/jav...mit" /> </form> 2. Create insert.php and copy below code into file. <?phpprint_r($_POST);$con...

    2216 days ago

  • Installing Bandage on Ubunty !

    ...p;should now be an executable file. Optionally, copy the progra...pdated and the previous index files will be used. GPG error: htt....(Reading database ... 480949 files and directories currently in...aboutdialog.o DinoTools.o Makefile moc_infotextwidget.cpp moc_ve...

    2203 days ago

  • Install ImageMagick from Unix Source

    ...for C compiler default output file name... a.outchecking for suf...iler options needed for large files... nochecking for _FILE_OFFS...r... yeschecking whether stat file-mode macros are broken... noc...rationchecking that generated files are newer than configure......

    2160 days ago

  • Installing Trinity !

    ...In member function ‘bool makefile_builder::dependency::operator...[-Wparentheses] return ( filename.size() > 2 &&...base/ErrorHandling.o obj/base/FileParser.o obj/base/StringUtil.o...only retain the Trinity fasta file, rename as ${output_dir}.Trin...

    2148 days ago

  • CANU genome assembly parameters !

    ...useGrid=false \ [other-options] \ read_file.fastq.gz A default Ca...out parameter tweaking. The output directory contains will contain many files. The most interesting ones a...

    1959 days ago

  • AWK for beginners !

    ...parses each # record of each file supplied. Each record is spli..., before you process any text files. If you # have no text...ming the arguments # are files for it to process delet...so use a variable: outfile = "/tmp/foobar.txt"; p...

    1850 days ago

  • List of perl special symbols !

    ...r ($, @, or %), such as $_ ( explained below ). Special Symbols – File handlers $@ Perl error str...’ $? Exit status from last process $AGRV – name of current file @ARGV – command line a...

    1573 days ago

  • Explore taxdump files !

    ...nodes.dmp readme.txt The readme.txt file gives a brief description of *.dmp files. These files contain taxono...n of field position and meaning for each file follows. nodes.dmp ------...rial genetic code id -- see gencode.dmp file inherited MGC flag (1 or...

    1562 days ago

  • Perl one-liner for beginners !

    ...e '$cnt = tr/"//;print "$cnt\n"' inputFileName.txt Adds strin...perl -pe 's/(.*)/string\t$1/' inFile > outFile Appen...allWordsOnlyLowercase.txt Go through file, split line at each space and...

    1395 days ago