Results for "files"
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Basic command-line to run BLAST
...gz This is only the first part of the human and cow protein files - there are 24 files total for human. The databas...in.faa -dbtype prot ls Note that this makes a lot of extra files, with the same name as the da...2242 days ago
Installing Bandage on Ubunty !
...pository is not updated and the previous index files will be used. GPG error: http...lable: NO_PUBKEY 6A030B21BA07F4FBW: Some index files failed to download. They have...ibqt5core5a:amd64.(Reading database ... 480949 files and directories currently ins...2187 days ago
Install ImageMagick from Unix Source
...-Echecking for ANSI C header files... yeschecking for sys/types....in/ld option to reload object files... -rchecking for objdump......yeschecking for X11 configure files... checking for GOMP_parallel...c -m 644 ./www/api/MagickWand/files.html /usr/local/share/doc/Ima...2144 days ago
- ...no checking for suffix of object files... o checking whether we are...anged config.status: executing depfiles commands make[1]: Entering d...er function ‘void JobControl::ClearFiles()’: ./analysis/RunButterfly...... checking for suffix of object files... o checking whether we are...
2131 days ago
CANU genome assembly parameters !
...reads.fastq.gz There is a brilliant section in documentation about parameter tweaking. The output directory contains will contain many files. The most interesting ones ar...1943 days ago
- ...ripts, particularly ones that read files line by line and split on del...ttern is true # BEFORE any of the files are read. The END pattern is...assuming the arguments # are files for it to process delete...ly if you're processing lines from files or standard # input. # # W...
1833 days ago
- ...nodes.dmp division.dmp gencode.dmp merged.dmp names.dmp nodes.dmp readme.txt The readme.txt file gives a brief description of *.dmp files. These files contain taxonomic informatio...
1546 days ago
Protocol for De novo Genome Assembly using Illumina Reads
...eck the qualiy with fastQC.Scripthttps://bioinformaticsonline.com/snippets/view/42540/install-fastqc-using-conda Quality trimming/cleanup of read files.This function trims adapters,...1202 days ago
Ancient whole genome duplication (WGD) detection tools !
...somes (2n = 4x8 = 32) Download the tutorial for CDS and GFF annotation files mkdir -p wgd_tutorial &...ution. pre: preprocess the CDS file syn: Call I-ADHoRe 3.0 to use GFF files for collinearity analysis vi...1153 days ago
Illumina based assembly pipeline steps !
Illumina Merge re-sequenced FastQ files (cat) Read QC (FastQC) Adapter trimming (fastp) Removal of host reads (Kraken 2; optional) Variant calling Read alignment (Bowtie 2)...875 days ago
