Latest paper on comparison of mapping tools
...earch-pub.gene.com/gmap/ RMAP http://rulai.cshl.edu/rmap/ mrsFAST http://mrsfast.sourceforge.net/Home http://sourceforge.net/projects/mrsfast/files/mrsfast-ultra-3.1.0/ BFAST...3910 days ago
Public Databases for Bioinformatics !
...B of SSD storage 12TB RAID5 local storage Filesystem: /users/$USER defaul...lel programming patterns: # gzip a bunch of files parallel gzip -- *.FILESTOGZ...AP datasets https://www.encodeproject.org/files/ENCFF446WOD/@@download/ENCFF4...1153 days ago
Integrative Genomics Viewer (IGV) tutorial
The Integrative Genomics Viewer (IGV) from the Broad Center allows you to view several types of data files involved in any NGS analysis that employs a reference genome, including how...3599 days ago
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HOMER: Software for motif discovery and next-gen sequencing analysis
...etting up your computing environment Retrieving and storing sequencing files (your own data or from p...on Mapping reads to a reference genome Manipulating SAM/BAM alignment files Visualizing data in a genome...2945 days ago
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