MGSE: Mapping-based Genome Size Estimation
MGSE can harness the power of files generated in genome sequencing projects to predict the genome size. Required are the FASTA file containing a high continuity assembly and a BAM fi...1584 days ago
MitoZ: a toolkit for animal mitochondrial genome assembly, annotation and visualization
MitoZ is a Python3-based toolkit which aims to automatically filter pair-end raw data (fastq files), assemble genome, search for mitogenome sequences from the genome assembly result,...1577 days ago
Rcorrector: efficient and accurate error correction for Illumina RNA-seq reads
...Public License from https://github.com/mourisl/Rcorrector/. Usage: perl run_rcorrector.pl [OPTIONS] OPTIONS: Required -s seq_files: comma separated files for single-end data sets -1...1566 days ago
1563 days ago
SeqMule: Automated human exome/genome variants detection
SeqMule takes single-end or paird-end FASTQ or BAM files, generates a script consisting of more than 10 popular alignment, analysis tools and runs the script line by line. Users can change the pipeline or fine-tune the parameters by modifying its configuration file.1552 days ago
Juicebox: Visualization and analysis software for Hi-C data
...eb. Detailed documentation is available on the wiki. Instructions below pertain primarily to usage of command line tools and the Juicebox jar files. Juicebox can now be used to...1550 days ago
JCVI:Python utility libraries on genome assembly, annotation and comparative genomics
Collection of Python libraries to parse bioinformatics files, or perform computation related to assembly, annotation, and comparative genomics. https://github.com/tanghaibao/jcvi More at https://github.com/tanghaibao/jcvi/wiki1524 days ago
1498 days ago
CAT/BAT: tool for taxonomic classification of contigs and metagenome-assembled genomes (MAGs)
...-based classification of the entire contig / MAG based on classification of the individual ORFs. CAT and BAT can be run from intermediate steps if files are formated appropriately (s...1462 days ago
Genobuntu: Package for Next Generation Sequencing and Genome Assembly
...ost assembly tools.Commonly used biological software and example script files for different assembly pipelines have also been provided, where the example script files can be updated to suit one&rs...1462 days ago