2156 days ago
2154 days ago
MECAT: fast mapping, error correction, and de novo assembly for single-molecule sequencing reads
MECAT is an ultra-fast Mapping, Error Correction and de novo Assembly Tools for single molecula sequencing (SMRT) reads. MECAT employs novel alignment and error correction algorith...2188 days ago
chromoMap-An R package for Interactive Visualization and Annotation of Chromosomes
Provides interactive, configurable and elegant graphics visualization of the chromo...t introduces a special plot viz. the "chromosome heatmap" that, in addition to mapping elements, can visualize the d...1852 days ago
2176 days ago
GenomeMapper: Simultaneous alignment of short reads against multiple genomes
GenomeMapper is a short read mapping tool designed for accurate read alignments. It quickly aligns millions of reads either with ungapped or gapped alignments. It can be used to align...2174 days ago
FastANI: fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI)
...of whole-genome Average Nucleotide Identity (ANI). ANI is defined as mean nucleotide identity...nts and uses Mashmap as its MinHash based sequence mapping engine to compute the orthologous mappings and alignment identity estim...2124 days ago
ARC: pipeline which facilitates iterative, reference guided de novo assemblies
ARC is a pipeline which facilitates iterative, reference guided de novo a...ich should assemble together. Reducing/removing reference bias as compared to mapping based approaches. The soft...2112 days ago
nanofilt: Filtering and trimming of long read sequencing data
Filtering on quality and/or read length, and optional trimming after passing filters.Reads from stdin, writes to stdout. Intended to be used: directly after fastq extraction prior to mapping in a stream between extraction and mapping https://github.com/wdecoster/nanofilt2108 days ago
2092 days ago