Results for "folder"
Bookmarks
Linux command line exercises for NGS data processing
...as well as giving experience in writing one-liners. Copy the required files to your current directory, change directory (cd) to the linuxTutorial folder, and do all the processing in...2872 days ago
Fancy Oneliner for Bioinformatics !!
...through different topics. You can copy/paste the commands as they are in your terminal screen, provided you follow the same naming conventions and folder structures as we have. We are...2857 days ago
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
...matic Filtering, Trimming, Error Removing and Quality Control for fastq dataAfterQC can simply go through all fastq files in a folder and then output three folders: good, bad an...2363 days ago
AfterQC: Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
...utomatic Filtering, Trimming, Error Removing and Quality Control for fastq data AfterQC can simply go through all fastq files in a folder and then output three folders: good, bad and QC folders, w...2135 days ago
Snippy: Rapid haploid variant calling and core SNP phylogeny
...an give it on a single computer (tested to 64 cores). It is designed with speed in mind, and produces a consistent set of output files in a single folder. It can then take a set of Sn...2023 days ago
LSC: Improving PacBio Long Read Accuracy by Short Read Alignment
...roceeds in batches of long reads the size of which can be set by --long_read_batch_size N. Better compressed intermediate files. Added utilities folder. Added support for multiple...2066 days ago
- ... Download the package and double click it. The programs inside the package will be extracted to the destination folder (specified by you). Go to the destination folder and double click the pro...
2030 days ago
Pacasus: Correction of palindromes in long reads from PacBio and Nanopore
...eads after whole genome amplification. Check the poster from the Revolutionizing Next-Generation Sequencing (2nd edition) conference in the source folder: https://github.com/swar...1999 days ago
UPhO: Scripts for homology and orthology assessment from genomic sequences.
...efault, the field separator is the character "|" but custom delimiters can be defined. Examples of trees to test UPhO are provided in the TestData folder.1936 days ago
