Dahak: benchmarking and containerization of tools for analysis of complex non-clinical metagenomes.
...ows including data pre-processing, metagenome assembly, taxonomic and functional classification, genome binnin...h the workflow), and reproducibility. More at https://dahak-metagenomics.github.io/dahak/1509 days ago
CSA: A high-throughput chromosome-scale assembly pipeline for vertebrate genomes
The pipeline can use information from scaffolded assemblies (for example from HiC or 10X Genomics), or even from diverged (~65-...1174 days ago
Predict Gene Ontology with sequences !
PANNZER (Protein ANNotation with Z-scoRE) is a fully automated service for functional annotation of prokaryotic and eukaryotic proteins of unknown function. The tool is designed to predict the function...1419 days ago
wgd—simple command line tools for the analysis of ancient whole-genome duplications
wgd is a easy to use command-line tool for KS distribution construction named...tools for modeling and visualization, rendering these analyses accessible to genomics researchers in a convenient m...1404 days ago
1383 days ago
PyParanoid: a pipeline for rapid identification of homologous gene families in a set of genomes
PyParanoid is a pipeline for rapid identification of homolog...et of genomes - a central task of any comparative genomics analysis. The "gold standard"...deluge of sequencing data means that comparative genomics analyses could be performed o...1383 days ago
1383 days ago
Sibelia: A comparative genomics tool
Sibelia: A comparative genomics tool: It assists biologists in analysing the genomic variations that correlate with pathogens, or the genomic changes that help microorganisms adapt...1374 days ago
CRBHits: From Conditional Reciprocal Best Hits to Codon Alignments and Ka/Ks in R
CRBHits is a coding sequence (CDS) analysis pipeline in R (R Core Team, 2019). It reimpl...y, population and evolutionary biologists working in the field of comparative genomics.1293 days ago
Applied Computational Genomics Course at UU: Spring 2020
This course will provide a comprehensive introduction to fun...n the analysis and interpretation of experimental genomics data. It will be structured a...d analysis strategies that underlie computational genomics research. The primary go...1251 days ago