Next Generation Sequencing (NGS) Tutorials
...ation sequencing data. http://www.ncbi.nlm.nih.gov/pubmed/23657089 GATK: a Toolkit for Genome Analysis http://www.broadinstitute.org/gatk/ Metagenomics:http://www.nbi...3487 days ago
3653 days ago
geck: trio-based comparative benchmarking of variant calls
Determine the accuracy of our model by comparing the precision and recall of GATK Unified Genotyper and Haplotype Caller on the high-confidence SNPs of the NIST Ashkenazim trio and t...1812 days ago
Snakemake workflow: dna-seq-gatk-variant-calling
This Snakemake pipeline implements the GATK best-practices workflow for calling small genomic variants.1746 days ago
1543 days ago
Best Practices for Variant Calling with the GATK
...tations below were filmed during the March 2015 GATK Workshop, part of the BroadE...rsion of Broad’s Genome Analysis Toolkit (GATK) was version 3.3....PDF Video 03/19/15 Introduction to the GATK Geraldine Van der Auwera PD...1534 days ago