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Results for "gatk"

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• • Jit@jit.aber

  

  #GATK and #Picard to filter low quality variants https://insidedna.me/tutorials/view/gatk-picard-filter-vcf-variants-snp

  Tags: GATK, Picard

  2852 days ago

• • Neelam Jha@neelam

  

  GATK is open source https://software.broadinstitute.org/gatk/ #GATK #Broad

  Tags: GATK, Broad

  2035 days ago

• • Rahul Nayak@rahul

  

  Analyse your sample with GATK pipeline. https://app.terra.bio/ #GATK

  Tags: GATK

  1547 days ago

• • BioStar@biostar

  

  #Genome #Analysis #Toolkit #Variant Discovery in High-Throughput #Sequencing Data https://gatk.broadinstitute.org/hc/en-us #GATK

  Tags: Genome, Analysis, Toolkit, Variant, Sequencing, GATK

  1528 days ago

• • biogeek@biogeek

  

  (grep ^"#" in.gff; grep -v ^"#" in.gff | sort -k1,1 -k4,4n) | bgzip > sorted.gff.gz; tabix -p gff sorted.gff.gz; #GATK

  Tags: GATK

  1528 days ago

• • biogeek@biogeek

  

  Useful bioinformatics database for GATK analysis ftp://ftp.broadinstitute.org/bundle/hg38/ #GATK #Database

  Tags: GATK, Database

  1526 days ago

• • biogeek@biogeek

  

  Best Practices for Variant Calling with the GATK

  The presentations below were filmed during the March 2015 GATK Workshop, part of the BroadE Workshop series. At the time of this workshop, the current version of Broad’s Genome Analysis Toolkit (GATK) was version 3.3. Genome Analysis Toolkit 0...

  Tags: Best, Practices, Variant, Calling, GATK

  1526 days ago