Results for "gene"
Top-level pages
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...ChimeRScope Fusion transcript prediction using gene k-mers profiles of the R...ICADo Detection of mutations in targeted third-generation NGS data (can distingui...afcluster Clustering of reads from different genes and different species based...2364 days ago
Single Cell RNAseq data analysis tutorial !!
...age expression level for each gene across a large population of...sufficient for studying heterogeneous systems, e.g. early d...Single-Cell Resolution of Temporal Gene Expression during Heart Devel...OEFinder: Identify ordering effect genes in single cell RNA-seq data...2344 days ago
- ...design, quality control, read alignment, quantification of gene and transcript levels, visualization, differential gene expression, alternative splic...s easy as 1-2-3 with limma, Glimma and edgeR Differential gene and transcript expression ana...
2344 days ago
Tools for bacterial whole genome annotation
...cess that includes prediction of protein-coding genes, as well as other functional...ch as structural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and...espectively, against a nonredundant set of KEGG GENES. KOALA (KEGG Orthology And L...2325 days ago
List of visualization tools for network biology
...rks https://github.com/juliemkauffman/DyCoNet GENeVis Network and pathway visualization http://tinyurl.com/genevis/ GEPHI Interactive....fi/group/sysfys/software/rematch/ SNOW Gene mapping on a reference or hum...2281 days ago
Webinar on RNA-Seq Data Analysis on 28 Feb 2018
...ential expression analysis, Splicing events and gene fusion detection. Strand NGS...ts novel discovery like identification of novel genes, exons and novel splice junc...cal contextualization on the set of interesting genes from the data by allowing do...2257 days ago
Bioinformatics tools to detect horizontal gene transfer (HGT) in genomes
Horizontal gene transfer (HGT), the “non-sexual movement of genetic material between two organi...a eukaryotic species to gain a gene by HGT, foreign DNA must ente...lection, despite potential for genetic incompatibility with the h...sp;download 22355228 GeneMarkS / 4.30 HGT de...843 days ago
Some useful Bioinformatics links
...m/nanoporetech/ont-assembly-polish Generade-nl/TULIP: TULIP - The Unc...ation Pipeline https://github.com/Generade-nl/TULIP www.nature.com...ptimization platform for synthetic gene design | Bioinformatics | Oxf....1186/1471-2105-15-211 Palindromic gene amplification — an evol...2235 days ago
Ancestral sequence reconstruction steps !
...dash; also known as ancestral gene/sequence reconstruction/resur...the synthesis of an ancestral gene and expression of the co...r variety of and much more ancient genes. Over the last decade,...; 2- Your dataset has a good phylogenetic signal, is possible to per...2172 days ago
Understanding BLASTn output format 6 !
...6 BLASTn maps DNA against DNA, for example gene sequences against a reference genomeblastn -query genes.ffn -subject genome.fna -o...rt send evalue bitscore 1. qseqid query (e.g., gene) sequence id 2. sseqi...2132 days ago
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