PhyloHerb: A highâthroughput phylogenomic pipeline for processing genome skimming data
...ealing with lower quality data. Examples include low-coverage (5x cpDNA) plastome phylogeny, recycling plastid genes from target enrichment data, retrieving low-copy nuclear genes from medium coverage (5x nucD...255 days ago
Orthoflow: workflow for phylogenetic inference of genome-scale datasets of protein-coding genes
Orthoflow is a workflow for phylogenetic inference of genome-scale datasets of protein-coding genes. Our goal was to make it straightforward to work from a combination of input sourc...87 days ago
PhyloHerb: Phylogenomic Analysis Pipeline for Herbarium Specimens
...ealing with lower quality data. Examples include low-coverage (5x cpDNA) plastome phylogeny, recycling plastid genes from target enrichment data, retrieving low-copy nuclear genes from medium coverage (5x nucD...87 days ago
OMArk: software for proteome (protein-coding gene repertoire) quality assessment
...ein-coding gene repertoire) quality assessment. It provides measures of proteome completeness, characterizes the consistency of all protein coding genes with regard to their homologs...87 days ago
doubletrouble: identify duplicated genes from whole-genome protein sequences and classify
doubletrouble aims to identify duplicated genes from whole-genome protein sequences and classify them based...on) gene pairs. Besides classifying gene pairs, users can also classify genes, so that each gene is assigne...74 days ago
bacLIFE: an automated genome mining tool for identification of lifestyle associated genes
...cs to predict bacterial lifestyles and to pinpoint candidate genes, denominated lifestyle-associated genes (LAGs), and biosynthetic gene...Clustering module Predicts, clusters and annotates the genes of every input genome Lifest...64 days ago
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