2298 days ago
PGAP-X: Extension on pan-genome analysis pipeline
...ve been developed and integrated to analyze and visualize genomics structure variation, gene distribution with different conservative levels, and genetic variation from pan-genome sig...2294 days ago
kWIP: The k-mer weighted inner product, a de novo estimator of genetic similarity
...s a de novo, alignment free measure of sample genetic dissimilarity which operates...sequencing reads. It is able to calculate the genetic dissimilarity between samples...ut assembling one. De novo estimates of genetic relatedness from next-gen seq...2168 days ago
miREM: an expectation-maximization approach for prioritizing miRNAs associated with gene-set
From list of genes... ... to microRNAs Using established miRNA-interaction databases, miREM combines hypergeometric and expectation-maximization algorithms to sieve through your genetic data for microRNA signatures https://bioinfo-csi.nus.edu.sg/mirem2/2089 days ago
2069 days ago
BLAST options, setting and defaults
...filter applied to the query sequence default = DUST default = SEG default = SEG default = SEG default = SEG default = DUST Query genetic code:genetic code to be used in BLASTX tra...1973 days ago
1950 days ago
Quick tour of Genetic Algorithms !
...vides a collection of general purpose functions for optimization using genetic algorithms. The package includes a flexible set of tools for implementing genetic algorithms search in both the...1935 days ago
DISTRUCT: a program for the graphical display of population structure
...rogram that can be used to graphically display results produced by the genetic clustering program struc...y individual membership coefficients in the same form as used in "Genetic structure of human population...1868 days ago
MGERT: Mobile Genetic Elements Retrieving Tool
MGERT is a computational pipeline for easy retrieving of MGE's coding sequences of a particular family from genome assemblies. MGERT utilizes several established bioinformatic tools combined into single pipeline which hides different technical quirks from an inexperienced user.1814 days ago