Results for "genetic variation"
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A program to detect recombination hotspots using population genetic data. More at https://github.com/auton1/LDhot3029 days ago
- Pilon is a software tool which can be used to: Automatically improve draft assemblies Find variation among strains, including larg...
3023 days ago
- Spines Spines is a collection of software tools, developed and used by the...ctures for efficient data manipulation (mostly genomic sequences, alignments, variation etc.), as well as specialized...
3022 days ago
- Stacks is a software pipeline for building loci from short-read sequences, such as those generated on the Illumina...h restriction enzyme-based data, such as RAD-seq, for the purpose of building genetic m...
3007 days ago
mrFAST: Micro Read Fast Alignment Search Tool
mrFAST is a read mapper that is designed to map short reads to reference genome with a special emphasis on the discovery of structural variation and segmental duplications. m...2945 days ago
Hagfish - assess an assembly through creative use of coverage plots
Hagfish is a tool that is to be used in data analysis of Next Generation Sequencing (...control of de novo genome assembly or identification of structural variation in a genome re-sequencing exp...2920 days ago
- Stampy is a package for the mapping of short reads from illumina sequencing mach...p-seq. Stampy excels in the mapping of reads containing that contain sequence variation relative to the reference, in...
2920 days ago
- This histone database can be used to explore the diversity of histone proteins and th...any organisms. The resource was established to better understand how sequence variation may affect functional and str...
2907 days ago
- Horizontal gene transfer (HGT), the transfer of genetic material between organisms, is crucial for genetic innovation and the evolution of genome...ction algorithms rely on a strong phylogenetic signal distinguishing the tra...or strains is challenging, as the phylogenetic s...
2888 days ago
- Genome STRiP (Genome STRucture In Popul...iscovering and genotyping structural variations using sequencing data. The m...ethods are designed to detect shared variation using data from multiple indi...t heterogeneous data sets, including variations in sequencing depth, read le...
2812 days ago
