Results for "genome"
Blogs
...reference build. LiftOver can have three use cases: (1) Convert genome position from one genome assembly to another genome as...vert dbSNP rs number from one build to another (3) Convert both genome position and dbSNP rs number...2155 days ago
- ...(** note: experimental parameter **, this functionality continues to be under development) # # --genome_guided_bam :genome guided mode, provide path to...
2128 days ago
List of motif discovery tools !
...cture to known active, binding and posttranslational modification sites. PEDANT -- Protein Extraction, Description and ANalysis Tool Conduct genome wide functional and structura...1988 days ago
CANU genome assembly parameters !
...[-s ] \ -p \ -d \ genomeSize=[g|m|k] \...or correction process. canu -p test_asmbl \ -d asm_test3 \ genomeSize=2m \ -maxThreads=2...1940 days ago
List of tools frequently used while genome assembly
List of tools frequently used while genome assembly: I have used the following assemblers Spades (v...Nanopolish (v. 0.8.3) I have used the following tools to assess genome assembly characteristics A...1925 days ago
Software for genome assembly !
List of bioinformatics tools/Software Website References for genome assembly: 1 Falcon https://github.com/PacificBiosciences/pb-assembly 2 Canu assembler http://canu.readthedoc...1339 days ago
10 NGS services companies around the globe !
...automation systems. The company’s genome services are suitable for cus...next generation sequencing services including genomes, targeted (re)-sequencing, h...tutions in India. Popular mentions – MedGenome (India), DNA Link, Inc. (Sout...1254 days ago
Bioinformatics tools for telomere to telomere assembly !
...;– algorithm that leverages a pangenome reference built from haplotype-resolved genome assemblies in conjunction wit...transcriptome data (Richard Kuo @GenomeRIK)● pbaa (PacBio A...ment of long transcriptomic reads to a genome, guided by a database of exon...987 days ago
Protocol for De novo Genome Assembly using Illumina Reads
...hod for small to medium-sized genomes. What is de novo genome assembly?The method of taking...on a sequencing computer in a genome sequencing experiment. Depend...ew/42542/trimmomatic-command Genome Assembly:The object of this p...genomes from read mappings. Genome finishing tools:Semi-automate...1200 days ago
Ancient whole genome duplication (WGD) detection tools !
...amp;& cd buildcmake .. -DCMAKE_INSTALL_PREFIX=~/opt/miniconda3/envs/wgd/make -j 4 make insatall Take the sugarcane genome Saccharum spontaneum L as an example. The genome is 8-ploid with 32 chromosome...1150 days ago
