Results for "genome assembly"
Blogs
...have three use cases: (1) Convert genome position from one genome assembly to another genome assembly In most scenarios, we have k...build to another (3) Convert both genome position and dbSNP rs number ov...re mapped on GRch38 because the new assembly is now better built without i...2154 days ago
- ...ntinues to be under development) # # --genome_guided_bam :genome guided mode, provide path to...inity_exec :do not run Trinity phase 2 (assembly of partitioned reads), and st...kdir :where Trinity phase-2 assembly computation takes place (defa...
2127 days ago
List of motif discovery tools !
In genetics, a sequence motif is a nucleotide or amino-acid sequence pattern that is widespread and has, or is co...tes. PEDANT -- Protein Extraction, Description and ANalysis Tool Conduct genome w...1987 days ago
CANU genome assembly parameters !
...-d \ genomeSize=[g|m|k] \...produces usually high quality assembly, example of a command that wa...\ -d asm_test3 \ genomeSize=2m \ -maxThreads=2 us...t read inclusion in the final assembly *.gfa : file containing...1939 days ago
List of tools frequently used while genome assembly
List of tools frequently used while genome assembly: I have used the following assemblers Spades (v. 3...polish (v. 0.8.3) I have used the following tools to assess genome assembly characteristics ANI.pl&nbs...1924 days ago
Software for genome assembly !
...ioinformatics tools/Software Website References for genome assembly: 1 Falcon https://github.com/PacificBiosciences/pb-assembly 2 Canu assembler http://canu...e markers http://busco.ezlab.org/ 10 Bandage graph assembly viewer https://rrwick.github....1338 days ago
10 NGS services companies around the globe !
The global NGS services market is expected to reach USD 13.1 bil...on systems. The company’s genome services are suitable for cus...eration sequencing services including genomes, targeted (re)-sequencing, h...n India. Popular mentions – MedGenome (...1253 days ago
Bioinformatics tools for telomere to telomere assembly !
...algorithm that leverages a pangenome reference built from haplotype-resolved genome assemblies in conjunction wit...ptome data (Richard Kuo @GenomeRIK)● pbaa (PacBio A...ong transcriptomic reads to a genome, guided by a database of exon a...986 days ago
Protocol for De novo Genome Assembly using Illumina Reads
...ress and describe the de novo assembly method for small to medium-sized genomes. What is de novo genome assembly?The method of taking a larg...the DNA originated relates to genome assembly. No previous knowledge of t...genomes from read mappings. Genome finishing tools:Semi-automated...1198 days ago
Ancient whole genome duplication (WGD) detection tools !
There are two methods for ancient WGD detection, one is collinearity analysis, and the other is based...miniconda3/envs/wgd/make -j 4 make insatall Take the sugarcane genome Saccharum spontaneum L as an example. The genome i...1149 days ago
