Bioinformatics software for biologists in the genomics era
The genome sequencing revolution is approaching a landmark figure of 1000 completely sequenced genomes. Coupled with fast-declining, per-base sequencing costs, thi...ologists should re-tool and become programmers when analyzing genome s...3784 days ago
shovill: Assemble bacterial isolate genomes from Illumina paired-end reads
Shovill is a pipeline which uses SPAdes at its core, but alters the steps before and after the primary assembly step to get similar results i...1216 days ago
Encode sequencing data freely available to download and use for academic means
In Encode, regulatory elements investigated via DNA hypersensitivity assays, assays of DNA methylation, and ch...iption factors, followed by sequencing (ChIP-Seq). More information: https://genome.u...3703 days ago
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Orione – a web-based framework for NGS analysis in microbiology
End-to-end NGS microbiology data analysis requires a diversity of tools covering bacterial resequencing, de novo assembly, scaffolding, bacterial RNA-S...3571 days ago
Bioinformatics algorithms tutorials
Useful bioinformatics tutorial, such as De Bruijn Graphs for NGS AssemblyAlgorithms for PacBio ReadsSo...for BioinformaticsFinding us in Homolog.us (Search Algorithms)NGS Genome and RNAseq Assembly - a Hands on PrimerIntroducti...3600 days ago
Integrative Genomics Viewer (IGV) tutorial
The Integrative Genomics Viewer (IGV) from the Broad Center allows you to view several types of data files involved in any NGS analysis that employs a reference genome,...3582 days ago
Swabs to Genomes: A Comprehensive Workflow
The sequencing, assembly, and basic analysis of microbial genomes, once a painstaking and expensive undertaking, has become almost t...ection of an environmental sample (a swab) to a published microbial genome; empowering even...3553 days ago
International Conference on Bioinformatics Models, Methods and Algorithms
The purpose of the International Conference on Bioinformatics Models, Methods and Algorithms is to bring together r...standing biological processes and systems, with a focus on new developments in genome b...3497 days ago