Results for "genome browser"
Blogs
Frequently used bioinformatics tools for viral genome analysis !
IVA: accurate de novo assembly of RNA virus genomes. Hunt M, Gall A, Ong SH, Brener J, Ferns B, Gou...-1 (2012). GAGE: GAGE: A critical evaluation of genome assemblies and assembly algorithms. Salzberg, S. L. et al. Genome...1061 days ago
Illumina based assembly pipeline steps !
Illumina Merge re-sequenced FastQ files (cat) Read QC (FastQC) Adapter trimming (f...optional) Alignment-level QC (picard, SAMtools) Genome-wide and amplicon coverage QC...l variant screenshots with annotation tracks (ASCIIGenome)...891 days ago
Useful Bioinformatics Analysis Tools !
CoMeta Classificier of reads from metagenomic sequencing experime...CoMeta: Classification of Metagenomes Using k-mers, PLOS ONE,...Compressor of collections of genome sequences. • ...obust relative compression of genomes with random access, Bio...877 days ago
- Elgg is an open-source and highly customizable framework...lps to manage and build your content through a web browser. Elgg offers a rich set of fe...ash; Access Elgg Web Interface Now, open your web browser and access the Elgg web inter...
725 days ago
List of comparative genomics resources !
...struction Tool Based on Whole Genomes Construct phylogenetic tree...Drosophila genomes. ECR Browser -- A Tool for Visualizing an...risons of Multiple Vertebrate Genomes Access to whole genome alig...ase dedicated to the study of genome conservation. OMA -- the...691 days ago
Online resources on must-read papers in evolutionary biology, for a literature club
1. *Nick Barton:* - The textbook "Evolution" by Nick Barton, with resources fo...09. 1b. Sachidandam et al. 2001. A map of human genome sequence variation containin...ml;bo S., 2010 A draft sequence of the Neandertal genome....691 days ago
Must read paper and books in evolution biology !
1. *Nick Barton:* - The textbook "Evolution" by Nick Barton, with resources fo...09. 1b. Sachidandam et al. 2001. A map of human genome sequence variation containin...ml;bo S., 2010 A draft sequence of the Neandertal genome....591 days ago
Common methods to discover tandem repeats
Tandem repeats are DNA sequences that are repeated in a contiguous manner in the genome. These sequences are often us...ods for discovering tandem repeats in genomes: Tandem Repeat Finder:...ehensively identify tandem repeats in genomes...437 days ago
Common steps for reads mapping !
Mapping reads to a reference genome is an essential step in many types...s to follow for mapping reads to a genome: Choose a read mapper: T...question. Index the reference genome: Before mapping reads, the re...ecifying the input data, reference genome,...437 days ago
Steps to find palindrome in genomes !
Palindromes are sequences of nucleotides that...rward. They can be present in genomes and have various biological...or discovering palindromes in genomes: Direct sequence search...tify palindromic regions in a genome. It involves plotting the gen...437 days ago
