2349 days ago
Single Cell RNAseq data analysis tutorial !!
A major breakthrough (replaced microarrays) in the late 00’s and has been widely used since Measures the&n...es and reveal cell-type-specific expression changes in type 2 diabetes http://genom...2348 days ago
2348 days ago
Tools for bacterial whole genome annotation
RAST – Web tool (upload contigs), uses the subsyst...ation (if you have only a few genomes to annotate). Prokka &...y useful if you have loads of genomes or need to annotate a pangen..., as well as other functional genome units such as structural RNAs...or annotating fully sequenced genom...2329 days ago
BBSplit: Read Binning Tool for Metagenomes and Contaminated Libraries
BBSplit internally uses BBMap to map reads to multiple genomes at once, and determine which genome they match best. This is different than with ordinary mapping. If a genom...2312 days ago
List of visualization tools for genome alignments
Genome browsers are useful not only for showing final results but...need publication ready figure of genomes. Following are the list of genome alignment visualization tools...tation information of a reference genome http://bioinformatics.zj.cn/...g and visualizing sequenced human genom...2281 days ago
Computational resources for TE discovery and TE detection
Transposable Elements (TEs) to genome structure and evolution as well as their impact on genome sequencing, assembly, annotation and alig...ab/data/LTR_Struc.html LTR_MINER http://genomebiology.com/2004/5/10/R79/supp...mer.sourceforge.net/ REPuter http://www.genom...2272 days ago
Webinar on RNA-Seq Data Analysis on 28 Feb 2018
Strand NGS is a biologist friendly NGS analysis tool that allows biologists to analyze t...rview of the workflow which includes Transcriptome/ Genome alignment, Differential expre...tering, Venn diagrams, CVA, UMI support and elastic genom...2262 days ago
Bioinformatics tools to detect horizontal gene transfer (HGT) in genomes
Horizontal gene transfer (HGT), the “non-sexual movement of genetic material betwe...DNA must enter the host nucleus, integrate into the genome, and in more complex organism...potential for genetic incompatibility with the host genom...848 days ago
Python learning resources for bioinformatics and computational biologist !
Python is a general-purpose language, which means it can b...Python Module of the Week (2.x) Python Notes for Professionals - Comp...Python Programming (PDF) (2.6) Scipy Lecture Notes SICP in Python (3.2) S...2253 days ago