Results for "genome notes"
Top-level pages
Some useful Bioinformatics links
...assembly of a complex animal genome | bioRxiv https://www.biorxi...-scale scaffolding of de novo genome assemblies based on chromatin...ed on the FMD-index for large genomes https://github.com/lh3/ferm...du/~langmea/resources/lecture_notes/assembly_olc.pdf SAM and BAM f...2239 days ago
Tools to Predict the Impact of Missense Variants !
Prioritizing missense variants for further experimental investigation is a key challenge in current sequencing stud...ingle‐nucleotide variants as well as insertion/deletions variants in the human genom...2201 days ago
- $ sudo apt-get install python-numpy python-scipy python-matplotlib ipython ipython-noteb...###[Mon May 7 11:29:18 2018] Reduction...#file name genome size contigs heterozygous siz...n May 7 11:29:35 2018] Final reduction...#file name genom...
2188 days ago
Gap filling or Contigs extensions tools !
There are many tools to perform gap filling using Illumina short reads, fo...aired reads" or "Toward almost closed genomes with GapFiller". There are a...take a look at the IMAGE tool: http://genomebiology.com/2010/11/4/R41...n't interested in assembling the full genom...2163 days ago
Understanding BLASTn output format 6 !
BLASTn output format 6 BLASTn maps DNA against DNA, for example gene sequences against a reference genomeblastn -query genes.ffn -subject genome.fna -outfmt 6 BLASTn tabula... 2. sseqid subject (e.g., reference genom...2137 days ago
List of non-commercial NGS genotype-calling software
Meaningful analysis of next-generation sequencing (NGS) data, which are produced extensi...ttp://www.broadinstitute.org/gsa/wiki/index.php/The_Genome_Analysis_Toolkit Multi-sample...er.ac.uk/resources/software/margarita) MaCH http://genom...2094 days ago
Bioinformatics in Africa:- Part 1
The Institut Pasteur de Côte d’Ivoire was created by the N°72511 la...;training in bioinformatics and genome data analysis. Sho...07 a yearly regional course of initiation and using genom...1188 days ago
Bioinformatics tools for genome assembly !
There are numerous genome assembly tools available, each with its...is a list of some widely used genome assembly tools as of my last...cell and multi-cell bacterial genomes, as well as small eukaryotic...assembling large and complex genomes. MaSuRCA: A hybrid asse...le for small and medium-sized genom...284 days ago
Steps to find all the repeats in the genome !
To find repeats in a genome from 2 to 9 length using a Perl script, you can use...he RepeatMasker website[0]. Prepare the genome sequence: Make sure you have the genome sequence in a FASTA file form...ecific needs and the characteristics of your genom...246 days ago
Mitochondrial genome assembly tools !
Mitochondrial genome assembly tools are specialized software and a...cing (NGS). The mitochondrial genome is relatively small compared...ine to assemble mitochondrial genomes and annotate mitochondrial g...for annotating mitochondrial genomes. It integrates multiple soft...PAdes: SPAdes (St. Petersburg genom...240 days ago
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