Results for "genome overlapping features"
Top-level pages
Software packages for next gen sequence analysis
..., CHiP-seq, browser and other features. Commercial. Win or MacOS. * SeqMan Genome Analyser - Software for Next...f Nucleotide Databases. Whole genome alig...na reads to a FASTA reference genome. By Andrew D. Smith and Zhenyu...om the Canada's Michael Smith Genome Sciences Centre. Perl/Linux. *...3252 days ago
Comprehensive list of visualization tools for biological pathways
The study of biological pathways is a key to understand the different processes inside a cell: proteins exe...kazusa.or.jp/ KEGG Atlas Interactive Kyoto Encyclopedia of Genes and Genomes pathways http://www.genome.j...2297 days ago
- Reformat is a member of the BBMap/BBTools package. It is a multipurpose tool designed for conver...ditional flag "-Xmx2g". For example, to change the line-wrapping length on the human genome (...
2724 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...gzipped or not; no reference genome required; read pairs can be giv...SnpEff Input: BAM Reference Genome: FASTA indexed with SAMtools fa...otations with gene annotation features BioR Description: (Ma...alf, CNV file -cnv Reference genome: -refgene (created in MATLAB, G...2919 days ago
- SLURM is a queue management system and stands for Simple Linux Utility for Resource Mana...hedule your job and how to monitor progress. SLURM has a number of valuable features compared to other job managem...
2924 days ago
Tools for Searching Repeats And Palindromic Sequences
What are genomic interspersed repeats? In the mid 1960's scientists discovered that many genomes contain stretches of highly repetitive DNA...at have been copied to another region of the genome.Inte...genes which have been reintegrated into the genome w...2221 days ago
- alignment: the mapping of a raw sequence read to a location within a reference genome. The mapping occurs because t...sequence reads to a reference genome. BAM Format: binary, compres...equence read to the reference genome. Three core abbreviations are...c variants. RNAME: reference genome iden...
2879 days ago
Genome Assembly Tools and Software - PART1 !!
...reported for the assembly of genomes while the others are designed aiming at handling complex genomes. TriMetAss 1.2 – Th...er designed to assemble virus genomes that have no repeat sequences, us...NA sequence data. Among other features, it allows use of the entire...2696 days ago
Quick next generation sequencing (NGS) terms definition
fragment size: the Illumina WGS protocol generates paired-end reads from both ends of...lled concordant if they can be mapped to the reference genome as &...: a read that can only be mapped to the reference genome b...2532 days ago
Awesome perl frameworks, libraries and software - PART 1
A curated list of awesome Perl frameworks, libraries and software. major/MySQLTuner-p...passing in the room name, authentication token and a message. Also includes features for selecting the colour, not...2499 days ago
