Alignment-free sequence comparison tools available for next-generation sequencing data analysis
kallisto Transcript abundance quantification from RNA-seq dat...https://github.com/bioinfo-ut/GenomeTester4/ Phy-Mer Reference-i...wn SNPs (dbSNP and Affymetrix's Genome-Wide Human SNP Array) from ra....g., ONT or PacBio reads, draft genomes) S...tool for MLST directly from the genome s...2382 days ago
2361 days ago
Single Cell RNAseq data analysis tutorial !!
A major breakthrough (replaced microarrays) in the late 00’s and has been widely used si...gnatures and reveal cell-type-specific expression changes in type 2 diabetes http://genome.c...2361 days ago
Tools for bacterial whole genome annotation
RAST – Web tool (upload contigs), uses the subsyst...ysis. Takes several hours per genome but I think this is the best...ation (if you have only a few genomes to annotate). Prokka &...y useful if you have loads of genomes or need to annotate a pangen...2342 days ago
Bioinformatics Web Application Development with Perl
Perl's second wave of adoption came from the growth of the...allows it to evolve to provide new and essential features. Catalyst has embraced the P...-relational mapper for Perl. While its high level features most directly compare to thos...2332 days ago
BBSplit: Read Binning Tool for Metagenomes and Contaminated Libraries
BBSplit internally uses BBMap to map reads to multiple genomes at once, and determine which genome they match best. This is different than with ordinary mapping. If a genome (...2325 days ago
List of visualization tools for genome alignments
...d publication ready figure of genomes. Following are the list of genome alignment visualization tools...ows visualization of sequence features, next-generation sequencing...on information of a reference genome htt...d visualizing sequenced human genomes http://www.svaproject.org Vi...2294 days ago
Computational resources for TE discovery and TE detection
Transposable Elements (TEs) to genome structure and evolution as well as their impact on genome sequencing, assembly, annotation and alignmen...trolab/data/LTR_Struc.html LTR_MINER http://genomebiolo.../mummer.sourceforge.net/ REPuter http://www.genomes....2284 days ago
Webinar on RNA-Seq Data Analysis on 28 Feb 2018
Strand NGS is a biologist friendly NGS analysis tool that allows b...which includes Transcriptome/ Genome alignment, Differential expre...CVA, UMI support and elastic genome browser used in RNA-Seq workflo...will give an overview of the features in the RNA-Seq data analysis...2275 days ago
Bioinformatics tools to detect horizontal gene transfer (HGT) in genomes
Horizontal gene transfer (HGT), the “non-sexual movement of genetic material between...gn DNA must enter the host nucleus, integrate into the genome, and...te potential for genetic incompatibility with the host genome a...861 days ago