Results for "genome reports"
Top-level pages
Gap filling or Contigs extensions tools !
There are many tools to perform gap filling using Illumina short reads, fo...aired reads" or "Toward almost closed genomes with GapFiller". There are a...take a look at the IMAGE tool: http://genomebiology.com/2010/11/4/R41...n't interested in assembling the full genome,...2174 days ago
Understanding BLASTn output format 6 !
BLASTn output format 6 BLASTn maps DNA against DNA, for example gene sequences against a reference genomeblastn -query genes.ffn -subject genome.fna -outfmt 6 BLASTn tabula... 2. sseqid subject (e.g., reference genome)...2148 days ago
My commonly used commands in Bioinformatics
FYI, I've found it useful to use MUMmer to extract the specific changes that Racon ma...r assembly.fasta racon_assembly.fasta show-snps -C -T -r nucmer.delta This reports Racon's changes in a table. Y...2119 days ago
List of non-commercial NGS genotype-calling software
Meaningful analysis of next-generation sequencing (NGS) data, which are produced extens...tp://www.broadinstitute.org/gsa/wiki/index.php/The_Genome_Analysis_Toolkit Multi-sample...r.ac.uk/resources/software/margarita) MaCH http://genome....2105 days ago
Bioinformatics in Africa:- Part 1
The Institut Pasteur de Côte d’Ivoire was created by the N°72511 l...training in bioinformatics and genome data analysis. Sho...7 a yearly regional course of initiation and using genome...1199 days ago
Bioinformatics tools for genome assembly !
There are numerous genome assembly tools available, each with its...is a list of some widely used genome assembly tools as of my last...cell and multi-cell bacterial genomes, as well as small eukaryotic...assembling large and complex genomes. MaSuRCA: A hybrid asse...295 days ago
Steps to find all the repeats in the genome !
To find repeats in a genome from 2 to 9 length using a Perl script, you can use...he RepeatMasker website[0]. Prepare the genome sequence: Make sure you have the genome sequence in a FASTA file form...ecific needs and the characteristics of your genome....257 days ago
Mitochondrial genome assembly tools !
Mitochondrial genome assembly tools are specialized software and a...cing (NGS). The mitochondrial genome is relatively small compared...ine to assemble mitochondrial genomes and annotate mitochondrial g...for annotating mitochondrial genomes. It integrates multiple soft...251 days ago
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