Software packages for next gen sequence analysis
...e. By Rozowsky J et al. C/Perl. * QuEST - Quantitative Enrichment of Sequence Tags. Sidow and Myers Labs at Stanford. From the 2008 publication Genome-wide analysis of transcription fac...3255 days ago
Comprehensive list of visualization tools for biological pathways
The study of biological pathways is a key to understand the different processes inside a cell: proteins exert their function not in isolation but in a tightly controlled...2300 days ago
2727 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...ng genotypic and phenotypic data; Features: Genome-wide association studies, genomic...alotypes, does not use population labels or genome-wide measures; designed to represe...on framework, Pathway Association Analysis, Genome-wide Haplotype Analysis, Input: P...2922 days ago
Worldwide funding agencies to fund your bioinformatics research !!
Are you seeking funding for research or training in a particular area? Check out the following agencies ... National Science Foundation: For the love of science!...2951 days ago
Tools for Searching Repeats And Palindromic Sequences
What are genomic interspersed repeats? In the mid 1960's scientists discovered that many genomes contain stretches of highly repetitive DNA sequences ( see Reassociation...2224 days ago
2882 days ago
Genome Assembly Tools and Software - PART1 !!
...the README.txt file and the “-h” option is not sufficient to understand the software. OMWare 1.0 – Efficient Assembly of Genome-wide Physical Maps The purpos...2699 days ago
Quick next generation sequencing (NGS) terms definition
...dicate a potential SV or a short insertion or deletion (indel).read depth: number of reads that map within a region of the genome. Overall genome-wide read depth is also referred t...2535 days ago
Awesome perl frameworks, libraries and software - PART 1
A curated list of awesome Perl frameworks, libraries and software. major/MySQLTuner-perl - MySQLTuner is a script written in Perl that will assist you with your M...2502 days ago