String graph based genome assembly software and tools !
...ive approach for assembling large genomes from NGS data caught our atte...thub.com/jts/sga Assembles large genomes from high coverage short read...;SAGE: String-overlap Assembly of GEnomes https://github.com/lucia...ficient de novo assembly of large genomes using compressed data structu...2322 days ago
BBTools for bioinformatician !
...As of BBmap v. 36.59] rendomreads.sh gains the ability to simulate metagenomes. coverage=X will automat...rated from that scaffold. So, if you concatenate together 20 bacterial genomes, you can run randomreads and...2264 days ago
10 NGS services companies around the globe !
...areas. It also provides next generation sequencing services including genomes, targeted (re)-sequencing, human sample sequencing, transcriptomes, metagenomes, regulomes, pre-sequencing, N...1253 days ago
Bioinformatics tools for telomere to telomere assembly !
...database of exon annotations. (Kristoffer Sahlin @krsahlin)● LeafGo – workflow to rapidly produce high-quality de novo plant genomes (Luca Ermini @ermini_luc...985 days ago
Protocol for De novo Genome Assembly using Illumina Reads
...ess and describe the de novo assembly method for small to medium-sized genomes. What is de novo genome asse...forge.net/inGAP is also useful for finding structural variants between genomes from read mappings. Genome f...1198 days ago
Frequently used bioinformatics tools for viral genome analysis !
IVA: accurate de novo assembly of RNA virus genomes. Hunt M, Gall A, Ong SH, Brener J, Ferns B, Goulder P, N..., R46 (2014). MUMmer: Versatile and open software for comparing large genomes. Kurtz, S. et al. Genome Biol...1040 days ago
Useful Bioinformatics Analysis Tools !
...bsp;CoMeta: Classification of Metagenomes Using k-mers, PLOS ONE,&...mpression of large collections of genomes, Scientific Reports,&nbs...nary distances in a collection of genomes. • Deorowicz...ta, Poster at The Biology of Genomes Conference, 2017;857 days ago
List of comparative genomics resources !
...struction Tool Based on Whole Genomes Construct phylogenetic tree...iometric comparisons of whole genomes Conduct comparative biometri...ompletely sequenced microbial genomes. MEGA -- Molecular Evolu...d integration with eukaryotic genomes Search for annotated genetic...670 days ago
Bioinformatics tools to explore SSRs in genomes !
There are several bioinformatics tools that can be used to explore Simple Sequence Repeats (SSRs), which are also known as microsatellites. Here are a few examples:...418 days ago
Common methods to discover tandem repeats
...mics research. Here are some methods for discovering tandem repeats in genomes: Tandem Repeat Finder: T...hese methods can be used to comprehensively identify tandem repeats in genomes....416 days ago