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• • Rahul Nayak@rahul

  

  Convert masked genome to N letters. $ perl -pe '/^[^>]/ and $_=~ s/[a-z]/N/g' genomic.fna > genomic.N-masked.fna #Genome #Masked #N #Convert

  2517 days ago

• • Jit@jit.aber

  

  Example commands to remove lower-case masking: perl -pe '/^[^>]/ and $_=uc' genomic.fna > genomic.unmasked.fna

  2359 days ago

• • Jit@jit.aber

  

  Unmask lowercase. perl -pe '/^[^>]/ and $_=uc' genomic.fna > genomic.unmasked.fna #LowerCase #Unmask

  2121 days ago

• • Jit@jit.aber

  

  Replace lowercase to N. perl -pe '/^[^>]/ and $_=~ s/[a-z]/N/g' genomic.fna > genomic.N-masked.fna #Mask #Lowecase2N #LowerCase

  2121 days ago

• • Jit@jit.aber

  

  #Mappy provides a convenient #interface to #minimap2, a fast and accurate #C program to #align #genomic and transcribe nucleotide #sequences. https://pypi.org/project/mappy/

  2036 days ago

• • BioStar@biostar

  

  Ten quick tips for sharing open genomic data https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1006472 #data #tips #genomics

  1948 days ago

• • Shruti Paniwala@shruti

  

  Improving the #Accuracy of #Genomic Analysis with #DeepVariant 1.0 https://ai.googleblog.com/2020/09/improving-accuracy-of-genomic-analysis.html

  1307 days ago

• • Abhinav@abhinav

  

  Nice #Upset #plot tutorial https://jokergoo.github.io/ComplexHeatmap-reference/book/upset-plot.html#example-with-the-genomic-regions

  370 days ago

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