Comment on "Short-read assembly using Spades !"
...ic or FastQC. Running SPAdes: After quality control, the next step is to run SPAdes. This can be done through a command-line interface or a graphical user interface. The command f...424 days ago
Comment on "RGFA: powerful and convenient handling of assembly graphs"
The Graphical Fragment Assembly (GFA) is a proposed format which allow to describe the product of sequence assembly. This gem implements the proposed specifications for the GFA format described under https://github.com/GFA-spec/GFA-spec/blob/master/GFA-spec.md as close as possible.1575 days ago
2145 days ago
Comment on "GraphMap - A highly sensitive and accurate mapper for long, error-prone reads"
...e: auto - Determines the format automatically from file extension. fastq - Loads FASTQ or FASTA files. fasta - Loads FASTQ or FASTA files. gfa - Graphical Fragment Assembly format. sam...2300 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
A Fugu–Human Genome Synteny Viewer: web software for graphical display and annotation reports of synteny between Fugu genomic sequence and human genes http://nar.oxfordjournals.org/content/32/8/2618.short3204 days ago
Comment on "R and Bioconductor Tutorial"
Rattle: A Graphical User Interface for Data Mining using R http://rattle.togaware.com/3710 days ago
3916 days ago