How to install Perl modules manually, using CPAN command, and other quick ways
...wnload. In this example, let us search, download and install XML::Parser Perl module. I have downloaded the XML-Parser-2.36.tar.gz to /home/download# cd /home/download# gzip -d XML-Parser-2.36.tar.gz#...3947 days ago
3936 days ago
Installing Perl environment on Linux
...L5LIB="$HOME/.plenv/build/perl-5.18.1/lib" Install BioPerl and PerlIO::gzip CPANMinus is a very good P...seful modules: $ cpanm Bio::Perl $ cpanm Bio::SearchIO $ cpanm PerlIO::gzip For more information, plea...2318 days ago
BBTools for bioinformatician !
...les Code: $ repair.sh in1=r1.fq.gz in2=r2.fq.gz out1=fixed1.fq.gz out2=fixed2...axinsert=4500 bell perfect=1 q=35 out=jump.fq.gz --------------------------...nce files Code: $ testformat.sh in=seq.fq.gz sanger fastq gz int...2267 days ago
Basic command-line to run BLAST
...wget ftp://ftp.ncbi.nih.gov/refseq/B_taurus/mRNA_Prot/cow.1.protein.faa.gz wget ftp://ftp.ncbi.nih.gov/refseq/H_sapiens/mRNA_Prot/human.1.protein.faa.gz This is only the first...2241 days ago
2157 days ago
Install ImageMagick from Unix Source
...ly almost all modern Unix systems have one. Download ImageMagick.tar.gzfrom www.imagemagick.org&...st. Unpack the distribution with this command: tar xvzf ImageMagick.tar.gz Next configure and compile...2143 days ago
2130 days ago
CANU genome assembly parameters !
...=false \ [other-options] \ read_file.fastq.gz A default Canu r...ads=2 useGrid=false \ -pacbio-raw \ ~/pacbio/dna/sample_reads.fastq.gz There is a brilliant se...1942 days ago
Protocol for De novo Genome Assembly using Illumina Reads
...f the protocol is to explain the method of assembling the reads trimmed by quality into draft contigs. spades.py -1 illumina_R1.fastq.gz -2 illumina_R2.fastq.gz --careful --cov-cutoff auto -...1201 days ago