3650 days ago
2984 days ago
Trimmomatic: A flexible read trimming tool for Illumina NGS data
...ed End: java -jar trimmomatic-0.35.jar PE -phred33 input_forward.fq.gz input_reverse.fq.gz output_forward_paired.fq.gz output_forward_unpaired.fq.gz output_reverse_paired.fq.gz output_reverse_unpaired.fq.gz...2939 days ago
Bpipe - a tool for running and managing bioinformatics pipelines
Bpipe provides a platform for running big bioinformatics jobs that consist of a series of processing stages - known as 'pipelines'. January 20th, 2016 - New! Bpipe...2902 days ago
2163 days ago
OPERA : Optimal Paired-End Read Assembler
...scaffolding large genomes (multi-library support, better repeat-handling etc.), in addition to other scalability and usability improvements (bam and gzip support, smaller memory foo...2792 days ago
2792 days ago
2710 days ago
2702 days ago
Standardized velvet assembly report
...attention to the kmer, cvCut, expCov, and other flags To Run: perl fastaAllSize mysequences.fa > mysequences.stat or gunzip -c mysequences.fa.gz | fastaAllSize > mysequenc...2701 days ago