Results for "haploid"
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CovCal: Coverage / Read Count Calculator
...milar calculator written by James Hadfield. Coverage is calculated as C=LN/G and reads as N=CG/L where C = Coverage (X),L = Read length (bp), G = Haploid genome size (bp), and N = Num...2177 days ago
- ...horter than around 80nt, or reads where the base qualities are low in all or most reads before 60nt. A5-miseq assumes it is assembling homozygous haploid genomes. Use a different asse...
2829 days ago
Nemo – A stochastic, individual-base, genetically explicit simulation platform
...ower). The effects of linkage can thus be finely explored. A new trait coding for (Bateson-)Dobzhansky-Muller incompatibility loci. Multiple haploid or diploid pairs of incompati...2784 days ago
Meraculous: De Novo Genome Assembly with Short Paired-End Reads
...eep paired-end short reads, and apply it to the assembly of a dataset of paired 75-bp Illumina reads derived from the 15.4 megabase genome of the haploid yeast Pichia stipitis. M...2383 days ago
Snippy: Rapid haploid variant calling and core SNP phylogeny
Snippy finds SNPs between a haploid reference genome and your NGS sequence reads. It will find both substitutions (snps) and insertions/deletions (indels). It will use as many CPUs a...2037 days ago
- ...eline also implements flexible and sensitive assembly error detection, a hierarchical scaffolding procedure and a reliable gap-closing method for haploid sub-assemblies. Source code,...
2059 days ago
Purge Haplotigs: Pipeline to help with curating heterozygous diploid genome assemblies
...stream analysis whether you're working on the haploid or phased-diploid assembly....ts to determine which contigs to keep for the haploid assembly. Dotplots are option...les of how Purge Haplotigs can improve a haploid and diploid assembly.1978 days ago
