Results for "haplotypes"
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CABOG: Celera Assembler with Best Overlap Graph
...It was the first to assemble the genome of a multicellular organism (Drosophila melanogaster, 2000). It was the first to assemble both parental haplotypes of one human genome (J. Craig...2562 days ago
Ranbow: a haplotype assembler for polyploid genomes
...lyploid genomes. After a first phasing, Ranbow utilizes the assembled haplotypes to improve the accuracy of va...bow hap: for haplotyping ranbow eval: for evaluating of the assemble haplotypes by gold standard (long) reads...2180 days ago
HapCUT2: robust and accurate haplotype assembly for diverse sequencing technologies
HapCUT2 is a maximum-likelihood-based tool for assembling haplotypes from DNA sequence reads, designed to "just work" with excellent speed and accuracy. We found that previously describ...2197 days ago
Rainbow: an integrated tool for efficient clustering and assembling RAD-seq reads
...Rainbow clusters reads using a spaced seed method. Then, Rainbow implements a heterozygote calling like strategy to divide potential groups into haplotypes in a top–down manner. A...2040 days ago
Purge Haplotigs: Pipeline to help with curating heterozygous diploid genome assemblies
Some parts of a genome may have a very high degree of heterozygosity. This causes contigs for both haplotypes of that part of the genome to be assembled as separate primary contigs, rat...1981 days ago
ALLHiC: Phasing and scaffolding polyploid genomes based on Hi-C data
...d genome is that Hi-C signals are frequently detected between allelic haplotypes and any existing stat of art Hi-C scaffolding program links the allelic haplotypes together. To solve the proble...1978 days ago
HipSTR: Haplotype inference and phasing for Short Tandem Repeats
...g data Employing a specialized hidden Markov model to align reads to candidate alleles while accounting for STR artifacts Utilizing phased SNP haplotypes to genotype and phase STRs...1900 days ago
HaploTypo: a variant-calling pipeline for phased genomes
An increasing number of phased (i.e. with resolved haplotypes) reference genomes are available. However, most...structure. Here, we present HaploTypo, a pipeline tailored to resolve haplotypes in genetic variation analyses...1614 days ago
GraphUnzip: Phases an assembly graph using Hi-C data and/or long reads.
GraphUnzip, a fast, memory-efficient and accurate tool to unzip assembly graphs into their constituent haplotypes using long reads and/or Hi-C data. As GraphUnzip only connects sequence...1199 days ago
HairSplitter: assembling long reads in an unknown number of haplotypes
...ole assembly Limited in the number of haplotypes Strengths of HairSplitter:...ained by any means HairSplitter can recover haplotypes and distinguish repeated elem...ained by any means HairSplitter can recover haplotypes and distinguish repeated elem...530 days ago
