Results for "haplotypes"
Blogs
Computer simulation of genetic mechanism !!
...ured population http://www2.unil.ch/popgen/softwares/quantinemo/ RECOAL Simulates new haplotype data from a reference population of haplotypes. ftp://popgen.usc.edu/...2990 days ago
Tools and Method for Haplotype phasing !
...ned in these results, however, is best exploited through phased haplotypes, which classify the alleles c...es not specifically observe which of the two parental chromosomes, or haplotypes, falls on a specific allele....1353 days ago
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Bookmarks
CABOG: Celera Assembler with Best Overlap Graph
...It was the first to assemble the genome of a multicellular organism (Drosophila melanogaster, 2000). It was the first to assemble both parental haplotypes of one human genome (J. Craig...2562 days ago
Ranbow: a haplotype assembler for polyploid genomes
...lyploid genomes. After a first phasing, Ranbow utilizes the assembled haplotypes to improve the accuracy of va...bow hap: for haplotyping ranbow eval: for evaluating of the assemble haplotypes by gold standard (long) reads...2180 days ago
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Files
Bioinformatics approach to Boar Taint
...structural annotation, and repeats, etc. Selected SNPs will be genotyped in sample population for validation and then used for constructing SNPs haplotypes in close linkage disequilibri...3804 days ago
Pages
Genome Assembly Tools and Software - PART2 !!
...t of variant calls in VCF format, HAPCOMPASS will assemble reads into haplotypes. GAM-NGS 1.1b – Genome...nsferring annotation. ShoRAH 0.8.2 – Short Reads Assembly into HaplotypesShoRAH is a software pack...2700 days ago
Top-level pages
List of generic simulation software/tools/resource with brief description and homepage !!!
...on in a structured population http://www2.unil.ch/popgen/softwares/quantinemo/RECOAL Simulates new haplotype data from a reference population of haplotypes. ftp://popgen.usc.edu/Recodon...3752 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...es, does not use population labels or genome-wide measures; designed to represent variation in one population; Fairly popular Input: Reference Haplotypes: Links to 1000 Genomes and Ha...2924 days ago
Wire posts
News
Phased Human Genome Assembly !
...embled with PacBio data generated with the company’s Sequel® System. Using the FALCON-Unzip assembler, maternal and paternal haplotypes were resolved over more than...2051 days ago
Bio-Scripts
- ...Call germline SNPs and indels via local re-assembly of haplotypes HaplotypeCallerSpark...Call somatic SNVs and indels via local assembly of haplotypes ReadsPipelineSpark...
2090 days ago
Tags
HairSplitter: assembling long reads in an unknown number of haplotypes
Pros and cons of HairSplitter Limitations of HairSplitter: Not very fast: it re-polishes the whole assembly Limited in the number of haplotypes Strengths of HairSplitter: Very modular, can be used with any assembler Naive: makes no assumption on ploidy, parameter-free Safe: won’...Tags: HairSplitter, assembling, long, reads, unknown, number, haplotypes
530 days ago
Comments
Comment on "Does anyone have Nanopore latest updates?"
Long read nanopore sequencing for detection of HLA and CYP2D6 variants and haplotypes http://f1000research.com/articles/4-17/v13403 days ago
