Results for "hidden markov model"
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Next generation sequencing in R or bioconductor environment
...inding sites of proteins in ChIP-Seq experiments. Its algorithm uses hidden Markov models (HMM) and Bayesian statistic...bound by transcription factors. PICS identifies enriched regions by modeling local concentrations of di...3624 days ago
Commercial and public next-gen-seq (NGS) software
Integrated solutions CLCbio Genomics Workbench - de novo a...on sequencer reads, aligned to whole chromosomes of model organism or mammalian genomes...of the Vancouver Short Read Analysis Package MACS - Model-based Analysis for ChIP-Seq....3518 days ago
Software packages for next gen sequence analysis
Integrated solutions * CLCbio Genomics Workbench - de novo...on sequencer reads, aligned to whole chromosomes of model organism or mammalian genomes...the Vancouver Short Read Analysis Package * MACS - Model-based Analysis for ChIP-Seq....3242 days ago
Binding Site Prediction in Protein !
The interaction between proteins and other molecules is fu...protein-structure prediction to provide structural models of the binding site. Ligands bound to structures are superimposed onto the model and use to predict the bindin...2202 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
Commercial tools Strand NGS offers man...Description: uses likelihood-based model for variant calling, starts f...bilisticallys instead of using ad-hoc modeling; effects are integrated at...put: covariance matrix for regression models mtSet Description: C...2908 days ago
- Linux Commands Cheat Sheet File System ls — list it...on date ls -a — list all items in current directory, including hidde...
2873 days ago
Genome Assembly Tools and Software - PART1 !!
...two categories: string-based model and graph-based model. We therefore list many genom...ly correspond the Clotho data model. Beyond database access and d...obust general time reversible model with gamma and invariant rate...nscription Unit Assembly by a Hidden Markov model TruHmm is a referen...2685 days ago
Awesome perl frameworks, libraries and software - PART 1
A curated list of awesome Perl frameworks, libraries and software. major/MySQLTune...l script for waking up computers via Wake-On-LAN magic packets dod38fr/config-model - Perl module to create...2489 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
kallisto Transcript abundance quantification from RNA-seq data (uses pseudo...free sequence dissimilarity measures d2* and d2 S under different Markov chain models (using k-words) R pack...2370 days ago
Single Cell RNAseq data analysis tutorial !!
A major breakthrough (replaced microarrays) in the late...are https://github.com/diazlab/SCell Beta-Poisson model for single-cell RNA-seq data...ltext/S1534-5807(16)30682-7 Scalable latent-factor models applied to single-cell RNA-s...2350 days ago
