Results for "host adaptation"
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HTTDB - Horizontally transferred transposable elements database
Transposons or Transposable elements (TEs) are "mobile genes" capable of...not contribute to the survival of the host that it inhabits, they are kn...n no easy way to visualise each TE or host species, and should be furthe...ion a viral genomic fragment into the host genom...2292 days ago
UCSC SARS-CoV-2 Genome Browser
The UCSC SARS-CoV-2 Genome Browser (https://genome.ucsc.edu/covid19.html) is an adaptation of our popular genome-browser...849 days ago
MimicrEE2: Genome-wide forward simulations of Evolve and Resequencing studies
MimicrEE2, a multi-threaded Java program for genome-wide forward simulations of evo...offers a wide range of different adaptive models (selective sweeps, polygenic adaptation, epistasis). MimicrEE2 runs o...2044 days ago
Seq: A high-performance, Pythonic language for bioinformatics
Seq is a programming language for computational genomics and bioinformatics. With a Python-compatible syntax and a host of do...1623 days ago
Nextflow: Data-driven computational pipelines
Nextflow enables scalable and reproducible scientific workflows using software containers. It allows the adaptation of pipelines written in the m...1535 days ago
ProteoClade: A taxonomic toolkit for multi-species and metaproteomic analysis
ProteoClade is a Python library for taxonomic-based annotation and quantification of bottom-up proteomics da...ed ahead of time, such as those involving Patient-Derived Xenografts (PDXs) or host-patho...1507 days ago
ShadowCaster: a hybrid approach for the detection of horizontal gene transfer events in prokaryotes
ShadowCaster implements an evolutionary model to calculate Bayesian likelihoods for each ‘alien genes’ with an unusual sequence composition according to the host genom...1390 days ago
- VICUNA is a de novo assembly program targeting populations with high mutation rates. It creates a single linear representation of the mixed population on which intra-host varia...
1348 days ago
Genomic Open-source Breeding informatics initiative
To build open-source genomic data management and analysis tools to enable breeders...by connecting diverse data with precision breeding tools to advance yields and adaptation to local growing conditions,...1213 days ago
What is the hologenome concept of evolution?
All multicellular organisms are colonized by microbes, but a gestalt study of the comp...e on the ecology and evolution of their macroscopic hosts has only recently become pos...approach to thinking about the topic is to view the host&ndash...1185 days ago
