Meraculous: Haplotype-sensitive Assembly of Highly Heterozygous genomes.
...us achieves high performance with large datasets by utilizing lightweight data structures and multi-threaded parallelization, allowing to assemble human-sized genomes on commodity cl...2327 days ago
SMASH: An alignment-free tool to find and visualise rearrangements between pairs of DNA sequences
...re, where the patterns are represented with several HSV values (only value varies). The following image, illustrating the information maps between human and chimpanzee for the severa...2326 days ago
TRRUST v2: an expanded reference database of human and mouse transcriptional regulatory interactions
TRRUST contains 8,444 and 6,552 TF-target regulatory relationships of 800 human TFs and 828 mouse TFs, respectively. They have been derived from 11,237 pubmed articles, which describ...2326 days ago
HGT-Finder: A New Tool for Horizontal Gene Transfer Finding and Application to Aspergillus genomes
...ical P value for each gene to indicate how likely it is to be horizontally transferred, and (iii) is fully automated (requires minimal human intervention), as well as ver...2299 days ago
2283 days ago
PLAR: Pipeline for lncRNA annotation from RNA-seq data
...l. (BLAST, Whole Genome Alignment (WGA), and synteny). One is comparing human GENCODE genes (from GENCODE v...Code Transcriptome lncRNAs Protein-coding Human hg19 hg19 Down...848 days ago
Carefully opt for human reference genome
Heng Li posted several issues with the human reference genomes given in these reso...ompressed FASTA file to be used as hg38/GRCh38 human reference genome. if you map...More at http://lh3.github.io/2017/11/13/which-human-reference-genome-to-use...1537 days ago
G-compass: a comparative genome browser
...browser. It visualizes evolutionarily conserved genomic regions between human and other 12 vertebrates base...iginal genome alignments pursuing higher coverage (1,2). Annotations of human genes/transcripts and their o...2214 days ago
HISAT2: a fast and sensitive alignment program for mapping next-generation sequencing reads
...ng reads (both DNA and RNA) to a population of human genomes (as well as to a sing...obal GFM index that represents a population of human genomes, HISAT2 uses a large...6 Kbp, with 55,000 indexes needed to cover the human population). These small inde...2188 days ago
CrossMap: a program for convenient conversion of genome coordinates
CrossMap is a program for convenient conversion of genome coordinates (or annotation files) between different assemblies (such as Human hg18 (NCBI36) <> hg19 (GRCh37), Mouse mm...2165 days ago