Results for "human reference genome"
Blogs
Converting a VCF into a FASTA given some reference !
Samtools/BCFtools (Heng Li) provides a Perl script vcfutils.pl which does this, the function vcf2fq (lines 469-528) This script has been modified b...2110 days ago
List of motif discovery tools !
In genetics, a sequence motif is a nucleotide or amino-acid seq...drug compounds. HGPD -- Human Gene and Protein Database A...g experiment-based results in human proteomics. HHsenser --...on and ANalysis Tool Conduct genome wi...pCyber:P~PEP -- a database of human protein protein interactions m...1988 days ago
CANU genome assembly parameters !
Choose the appropriate parameters to run Canu and run it. Th...-p \ -d \ genomeSize=[g|m|k] \.... canu -p test_asmbl \ -d asm_test3 \ genomeSize=2m \ -maxThreads=2...1939 days ago
List of tools frequently used while genome assembly
List of tools frequently used while genome assembly: I have used the following assemblers Spades (v. 3....nopolish (v. 0.8.3) I have used the following tools to assess genome assembly characteristics A...1924 days ago
Understanding reads mapping and flags !
Linear Alignment: An alignment of a read to a single reference sequence that may include insertions, deletions, skips and clippi...ads can be split in to two or more parts, each part would be mapped to refere...1831 days ago
Useful links to therapy, disease, drug and drug-target network data:
Useful links to therapy, disease, drug and drug-target network data: DrugBank: a bioinfor...rget Network: network data of 890 drugs and 394 target human pro...fic.thomson.com/products/iddb/HOMIM: a knowledgebase of human...1428 days ago
Software for genome assembly !
List of bioinformatics tools/Software Website References for genome assembly: 1 Falcon https://github.com/PacificBiosciences/pb-assembly 2 Canu assembler http://canu.readthedocs.io/en/latest/...1338 days ago
10 NGS services companies around the globe !
The global NGS services market is expected to reach USD...ms. The company’s genome services are suitable for cu...sequencing services including genomes, targeted (re)-sequencing, human sample sequencing, transcripto...Popular mentions – MedGenome (India), DNA Link, Inc. (Sout...1254 days ago
Bioinformatics tools for telomere to telomere assembly !
● Merfin – k-mer-ba...algorithm that leverages a pangenome reference built from haplotype-resolved genome assemblies in conjunction wit...ong transcriptomic reads to a genome, guided by a database of exon...ca Ermini @ermini_luca) Reference: https://www.pacb.com/blo...986 days ago
Protocol for De novo Genome Assembly using Illumina Reads
...hod for small to medium-sized genomes. What is de novo genome assembly?The method of taking...the DNA originated relates to genome assembly. No previous knowled...ew/42542/trimmomatic-command Genome Assembly:The object of this p...genomes from read mappings. Genome finishing tools:Semi-automate...1199 days ago
