Perl Special Vars Quick Reference
$_ The default or implicit variable. @_ Subroutine parameters. $a$b sort comparison routine v...mizations for large alternations. Encoding ${^ENCODING} The object refere...2646 days ago
Quick next generation sequencing (NGS) terms definition
fragment size: the Illumina WGS protocol generat...called concordant if they can be mapped to the reference genome as “expected”: (a) m...ads: a read that can only be mapped to the reference genome by breaking into two sub-read...2524 days ago
Phylogenetic & Molecular Genetics Terms and Definitions
analog -- A feature that appears similar in two taxa which have originated from two different ancestors. ancestor --...ification and mapping of coding sequences, for discovery of new genes and (by refere...2464 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...https://github.com/bioinfo-ut/GenomeTester4/ Phy-Mer Reference-independent mitochondrial hap...SNPs (dbSNP and Affymetrix's Genome-Wide Human SNP Array) from raw NGS reads...ol for MLST directly from the genome sequencing reads Software (P...2373 days ago
2353 days ago
Single Cell RNAseq data analysis tutorial !!
A major breakthrough (replaced microarrays) in the late 00’s and has been wide.../11/15/087775 Single cell transcriptomes identify human isl...ific expression changes in type 2 diabetes http://genome.cshlp.org/content/early/2016/...2353 days ago
Tools for bacterial whole genome annotation
...ation (if you have only a few genomes to annotate). Prokka &...y useful if you have loads of genomes or need to annotate a pangen..., as well as other functional genome units such as structural RNAs...or annotating fully sequenced genomes. PAGIT: Provides a toolkit...2334 days ago
BBSplit: Read Binning Tool for Metagenomes and Contaminated Libraries
...BMap to map reads to multiple genomes at once, and determine which genome they match best. This is dif...n with ordinary mapping. If a genome (say, human) contains an exact repeat somewhe...ultiple output files, one per reference. BBSplit can only be run u...2317 days ago
List of visualization tools for network biology
Network analysis is any structured technique used to mathematically analyze a circuit (a “network&rd...s.helsinki.fi/group/sysfys/software/rematch/ SNOW Gene mapping on a reference or human...2290 days ago
List of visualization tools for genome alignments
Genome browsers are useful not only for showing final results...eed publication ready figure of genomes. Following are the list of genome...ith annotation information of a reference genome http://bioinformatics.zj.cn/...ating and visualizing sequenced human genomes http://www.svaproject.org...2286 days ago