List of gene ontology software and tools
...s.technion.ac.il/ Gene Ontology for Functional Analysis (GOFFA) GOFFA is a tool developed for ArrayTrack™ that takes a list of genes and identifies terms in Gene Ontology (GO) d...3856 days ago
Software and Tools to detect structure variation with long reads !!
...parameter) or NGM-LR with the optional SAM attributes enabled! More at https://github.com/fritzsedlazeck/Sniffles MultiBreak-SV: It identifies structural variants from next...2754 days ago
1238 days ago
3155 days ago
Genome Assembly Tools and Software - PART2 !!
...ed Phrap with scaffolding), a WGS sequence assembler, that explicitly identifies exact kmer repeats from the s...equencesBRANCH is a software that extends de novo transfrags and identifies novel transfrags with DNA con...2831 days ago
List of In-silico Binding Site Prediction Tools
...ein surface. Using an efficient maximum clique algorithm, the program identifies proteins that share local str...://scbx.mssm.edu/sitehound/sitehound-download/download.html SiteHound identifies protein regions that are like...3890 days ago
Next generation sequencing in R or bioconductor environment
...The PICS package applies probabilistic inference to aligned-read ChIP-Seq data in order to identify regions bound by transcription factors. PICS identifies enriched regions by modeling...3770 days ago
Webinar on Streamlining large scale analysis using the Strand NGS Pipeline Manager on 24 Feb 2016
...sers. Finally, we will show a brief glimpse of an elaborate pipeline that aligns reads, filters poor-quality matches, computes coverage metrics, identifies variants, checks for sample c...3158 days ago
3036 days ago
2221 days ago
Tags: LTR_retriever, accurately, identifies, annotates, LTR, retrotransposons, LAI, evaluates, continuity, genome, assemblies.
2085 days ago
PhiSpy: PhiSpy identifies prophages in Bacterial (and probably Archaeal) genomes
PhiSpy identifies prophages in Bacterial (and probably Archaeal) genomes. Given an annotated genome it will use several approaches to identify the most likely prophage regions. Initial versions of PhiSpy were written by Sajia Akhter (sajia@stanford.edu) Edwards Bioinformatics Lab Improvem...Tags: PhiSpy, identifies, prophages, Bacterial, probably, Archaeal, genomes
1550 days ago
Comment on "Basic command-line to run BLAST"
BLAST compares a query sequence to a database of known sequences and identifies the most similar matches. This is useful for identifying the function of a newly discovered gene or for u...567 days ago
2283 days ago