Comment on "Tools for Differential expression analysis"
...Differential expression analysis is a widely used technique in genomics and transcriptomics research that allows researchers to identify genes that are differentially...413 days ago
Comment on "Tools for RNA classification"
...classification that uses a covariance model approach to identify RNA homologs. It is particularly useful for identifying non-coding RNA (ncRNA) seq...to classify RNA sequences. It is particularly useful for identifying small functional RNA molec...413 days ago
Comment on "Basic command-line to run BLAST"
...the most similar matches. This is useful for identifying the function of a newly di...the database. It then expands the matches to identify longer regions of similarity,...rs make many important discoveries, including identifying new genes and understandin...413 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
...uch as NCBI or Ensembl. Gene annotation: Annotate the genes in each genome using gene prediction software or tools such as MAKER. Identify orthologous genes: Identify the orthologous genes between...415 days ago
Comment on "Estimate Genome Size"
...s_0 > fastq.counts_0.histo # generate a pdf graph of the histogram jellyplot.pl fastq.counts_0.histo # look at fastq.counts_0.histo.pdf and identify the approximate peak # use f...1890 days ago
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Comment on "Comparative genomics educational material and papers bookmarks"
...performed a comprehensive and comparative study using 10 newly sequenced transcriptomes, as well as three publically available transcriptomes, to identify the origins, expansions and c...2726 days ago
Comment on "List of popular bioinformatics software/tools"
TopHat http://tophat.cbcb.umd.edu/manual.shtml is a program that aligns RNA-Seq reads to a genome in order to identify exon-exon splice junctions. It is built on the ultrafast short read mapping program Bowtie.3640 days ago
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Comment on "R and Bioconductor Tutorial"
...es [1] Biostrings – Reading sequences in R [2] BSGenomes – Reading in complete genomes and BioC annotation data [3] DEGSeq – Identify differentially expressed gene...3662 days ago