Results for "illumina"
Blogs
Computer simulation of genetic mechanism !!
...An R package for the Monte Carlo simulation of sequence evolution http://www.ebi.ac.uk/goldman-srv/phylosim/ pIRS Profile-based Illumina pair-end reads simulator http...2974 days ago
Structural variation: the hidden genomic treasure
...end mapping Link TIGER, transduction inference in germline genomes using short read data Link MANTA https://github.com/Illumina/manta SV-Bay https://gi...2701 days ago
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Bookmarks
Illuminating next generation sequencing data with Go
Another good lecture for Illumina sequencing data analysis from Dan Kortschak, Bioinformatics Group, School of Molecular and Biomedical Science ,The University of Adelaide3907 days ago
Next Generation Sequencing (NGS) Tutorials
...ection Introductory tutorial https://docs.google.com/document/pub?id=1ZRzrjjOCvtAu3m-IKL-rbJ1f4On60dDL_IEwG7oejdI Microbial de novo Assembly for Illumina Data Introductory tutorial ht...3486 days ago
- +87 more Bookmarks
Files
Bioinformatics approach to Boar Taint
...int levels. Resequencing of a total of 47 samples belong to Norwegian Landrace (NL) and Duroc (D) pigs with varied boar taint levels were done in Illumina HiSeq2000 to >10X average...3788 days ago
Pages
Genome Assembly Tools and Software - PART2 !!
...potential with multi-library Illumina-based projects. GeneStitch 1...or assembling and scaffolding Illumina sequencing data of microbial...s in any draft assembly using Illumina paired end reads. IMAGE is be..., trace data (ABI, SCF, AB1), Illumina and Roche 454 flowgrams into...2684 days ago
Top-level pages
List of pharmacogenomics companies worldwide
...www.tmdlab.com www.transgenomic.com www.twt.com www.uslabs.net www.variagenics.com Great Equipment Companies for Genomics www.affymetrix.com www.illumina.com www.iontorrent.com www.se...3921 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
..., 2010. PubMedCentral Biases in Illumina transcriptome sequencing caus...mizing PCR amplification bias in Illumina sequencing libraries. Aird et...t-a-glance quality assessment of Illumina second-generation sequencing...y with barcoding to allow use of Illumina sequencing to screen for retr...3778 days ago
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Wire posts
News
High Density Sheep SNP Genotyping Chip released!!!
...good news for you. FarmIQ in conjunction with Illumina and the International Sheep G...ing reduced representation libraries with the Illumina Genome Analyzer IIx. A set of...draft ovine genome. Read more @ http://res.illumina.com/documents/products/datash...3895 days ago
Illumina reveals first dataset of long reads
...the help of Moleculo technology , acquired by Illumina releases new service for long...lications on long reads and more: http://www.illumina.com/services/long-read-sequencing-service.ilmn http://blog.basespace.illumina.com/2013/07/22/first-data-set...3907 days ago
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Opportunity posts
Research Fellow @ Mendel laboratory
...100 researchers who focus on genetics. The Center is equipped with state of the art genomics technology (SOLiD 5500XL next generation sequencer, Illumina MiSeq, Affymetrix/Agilent mic...3812 days ago
Assistant Professor @ King Saud University Riyadh
...analytical support for next generation sequencing data analysis – Exome-sequencing, Targetted sequencing as well as high-throughput genotyping on Illumina platform. Job location:...3725 days ago
- +1 more Opportunity posts
ResearchLabs posts
- ...e for social phenotypes. We have been identifying genes and mechanisms involved in the evolution of insect societies using modern genomics tools (Illumina, RNAseq, RADseq...). For exam...
3557 days ago
Video
The Future of Personalized Medicine
Howard Jacob speaking on Personalize Medicine at the Illumina Meeting in Feb. of 2013.3740 days ago
Bio-Scripts
- ...ls that process sequencing machine data, e.g. Illumina base calls, and detect sequen...ing level attributes, e.g. adapters CheckIlluminaDirectory (Picard)...Classify PF-Failing reads in a HiSeqX Illumina Basecalling directory into va...
2074 days ago
Generate simulated polyploid genome !
...> toyheterozygous3percent.fasta #Cat both files cat toy.fasta toymutated3percent.fasta > toyheterozygous3percent.fasta #generated 50X of Illumina paired-end reads sim_reads...2052 days ago
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Tags
Protocol for De novo Genome Assembly using Illumina Reads
In this protocol, we address and describe the de novo assembly method for small to medium-sized genomes. What is de novo genome assembly?The method of taking a large number of short DNA sequences and placing them back together to create a reflection of the original chromosomes from which the DNA...Tags: Protocol, De novo, Genome, Assembly, Illumina, Reads
1203 days ago
Illumina based assembly pipeline steps !
Illumina Merge re-sequenced FastQ files (cat) Read QC (FastQC) Adapter trimming (fastp) Removal of host reads (Kraken 2; optional) Variant calling Read alignment (Bowtie 2) Sort and index alignments (SAMtools) Primer sequence removal (iVar; amplicon data only) Duplicate read marking (p...Tags: assembly, pipeline, genome, illumina
876 days ago
Comments
- ...eads based on sequencing technologies such as Illumina, SOLiD, and 454. It is a vers...oad. PIRS: PIRS (short for Profile-based Illumina pair-end Reads Simulator) is...rom different sequencing platforms, including Illumina, PacBio, and Oxford Nanopore....
414 days ago
Comment on "Short-read assembly using Spades !"
SPAdes (St. Petersburg genome assembler) is a popular tool for short-read assembly. It can assemble reads generated from Illumina, IonTorrent, PacBio, and Oxford Na...420 days ago
- +14 more Comments
