Comment on "Short-read assembly using Spades !"
...ptions for tuning the assembly parameters, such as adjusting the k-mer length or enabling error correction. The SPAdes manual provides detailed information on how to use these options....414 days ago
Comment on "Basic command-line to run BLAST"
...command-line interface. Interpret the results: After the search is complete, the results can be viewed and downloaded. The results include information about the sequences that matc...417 days ago
Comment on "Coronavirus Resources !"
...efines three classes of SARS-CoV-2 variants: Variant of Interest Variant of Concern Variant of High Consequence Intersting piece of information https://www.cdc.gov/coronavi...954 days ago
Comment on "Important Journals, Blogs and Forums for Bioinformaticians"
...4) Database: The Journal of Biological Databases and Curation (3.372 :: 4.510) BMC Bioinformatics (2.576 :: 3.452) IEEE Transactions on Information Technology in Biomedicine&nbs...1098 days ago
Comment on "Sibelia: A comparative genomics tool"
...ne" option produces more blocks (but shorter) and their coverage is worse. Usually "loose" is the best choice, but if you do not want to lose information about small-scale rearrangeme...1278 days ago
Comment on "REAPR: a universal tool for genome assembly evaluation"
...ifferent read lengths, so you’ll have to use assemblies based on the raw data for this. Run the command reapr perfectmap to get information on how to create a perfect ma...1331 days ago
1355 days ago
Comment on "Coronavirus Resources !"
Raw and assembled sequences related to the COVID-19 outbreak, including outbreak isolates and records relating to coronavirus biology. Includes extensive sampling information. https://www.covid19dataportal.org/sequences?db=embl1417 days ago
Comment on "Setting up autoConTAMPR !"
......Building dependency tree...Reading state information...The following NEW packages......Building dependency tree...Reading state information...The following extra package......Building dependency tree...Reading state information...The following extra package...1436 days ago
Comment on "Important Journals, Blogs and Forums for Bioinformaticians"
...4) Database: The Journal of Biological Databases and Curation (3.372 :: 4.510) BMC Bioinformatics (2.576 :: 3.452) IEEE Transactions on Information Technology in Biomedicine&nbs...1836 days ago