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Useful Publications and Websites for Deep Sequencing Data Analysis
...Linux is an open-source project that provides a bioinformatics Linux system for cloud computing, pre-configured with a variety of software tools installed and ready to use. A tutorial...3771 days ago
- ...ta between different formats. It supports, and can inter-convert: fastq fasta fasta+qual sam scarf (an old Illumina format) bam (if samtools is installed) gzip zip ascii-33 (sanger) a...
2705 days ago
- ...ckage to read the entire workbook, and then load the worksheets with readWorksheet. The XLConnect package requires Java to be pre-installed. > library(XLConne...
2481 days ago
Edit distance application in bioinformatics !
...cent characters to be a single edit. The module Text::Levenshtein::Damerau defaults to using a pure perl implementation, but if you've installed Text::Levenshtein::Damer...2333 days ago
Converting BLAST output into CSV
...mes and e-values. To save this to a file, do: python /root/ngs-scripts/blast/blast-to-csv.py out.txt > ~out.csv If you have Excel installed, try double clicking on it.2329 days ago
Tools for bacterial whole genome annotation
...ic genome assembly and annotation. It was validated on 18 oral streptococcal strains to produce submission-ready, annotated draft genomes. MyPro installed as a virtual machine and supp...2323 days ago
Installing Bio::SCF perl module
...endencies on other modules (almost always on CPAN) and cannot be installed without them (or without a sp...&package_id=108243&release_id=340318 confirm that the package installed correctly look for a library...2210 days ago
- ...g additional packages will be installed: blt fonts-lyx fonts-mathjax...ollowing NEW packages will be installed: blt fonts-lyx fonts-mathjax...ream-vera0 upgraded, 73 newly installed, 0 to remove and 35 not upgra...les and directories currently installed.)Preparing to unpack .../pyth...
2182 days ago
Creating conda environment for python2.7
TIP: By default, environments are installed into the envs directory in you...configuration file. The default packages are installed every time you create a new e...ent. If you do not want the default packages installed in a particular environment,...2182 days ago
- It's been a while since I last installed BLAT and when I went to the download direct...the command: make to compile the code.Blat installed cleanly and the executables w...information on blat and sample usage.Blat is installed and it's installed properly i...
2055 days ago
