How to install Perl modules manually, using CPAN command, and other quick ways
As a bioinformatics programmer, and crunchy data analyser you need to install several perl mo..."yum" for the rescue. Dont worry biological data cruncher, this is true we are...nning (atstart or never)? [atstart]Cache metadata (yes/no)? [yes]Policy on buil...3947 days ago
Five unique traits of effective computational biologist
Bioinformatics research is driven by large set of software, scripts, and tools to analyse gigantic biological data. Being a great biological pro...3948 days ago
List of popular bioinformatics software/tools
In current genome era, our day to day work is to handle the huge geneome sequences, expression data, several other datasets. This link provide a comprehensive list of commonly used sofware/tools.3943 days ago
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Regular Expression Cheat Sheet
The Regular Expression are the sole of Perl language, and for bioinformatician it is just a magical stick to resolve gingatic string data. We did not find any good and...3950 days ago
Master Thesis: Trans-membrane topology prediction through Markov based decoders
Abstract: Background/Motivation: The dearth of structural i...ire topology for 77% of the sequences in a standard dataset of 86 proteins with superv...atlab Conclusion/Implementation: Here discriminant data mining approach was used to p...3942 days ago
Which are the best statistical programming languages to study for a bioinformatician?
In Bio-informatics based genome sequencing and predicting metabolic pathways re...st to Bio-informatics work that is math heavy and deals with a large amount of data.3949 days ago
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Bio++ : C Language libraries for your biological need
C has always been a language that never attempts...Access), allowing you to fetch public databases like GenBank, EMBL or Sw...genetics and molecular evolution Data structure and IO Phylogeneti...ks with Function objects).Statistics: DataTable object, with I/O from CS...3945 days ago
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R package for visualising GO enrichment
An R package that visualizes the GO enrichment results as word clouds and arranges them together with figures of experimental data. This allows us to draw infor...3937 days ago
Structural polymorphism analysis from NGS data
The LabEx BASC (Biodiversity, Agroecosystems, So...lyze Next Generation Sequencing (NGS) data analysis. In the context of a...rder to ensure compliance of produced datasets with pipelines requiremen...ional facilities and expertise in NGS data analysis, and will benefit as...3946 days ago
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Bioinformatician become producer/director !!!
If a Bioinformatician starts producing Hindi Bollywood movies,...Gene se Genome tak. Maine BLAST kiya. NCBI wale Data le jayenge Raju ban ga...To Hona Hi Tha !! Meri Gene Tumhare Paas Hai Aao Database Search Kare Bioinformati...3916 days ago
The Best Bioinformatics / Computational Biology Quotes
Bioinformatician are not anti-social; We are just genome friendly. Bioinformatician wo...mes. I'm BioGeek. Fedup with LIPS, try God script. Idiot, Go ahead, make my data! Thank god, my genome just c...3718 days ago
Computational Biology in the 21st Century: Making Sense out of Massive Data
Computational Biology in the 21st Century: Making Sense out of Massive Data Air date: Wednesday...al increase in genomic and biomedical data, which will soon outstrip adv...acting new science from these massive datasets will require not only fas...3899 days ago
Bioinformatics -- Understanding of living systems through information science
Recently, the progress of the Human Genome Project, aiming to decode all human DNA sequen...to certain lifestyle-related diseases, by understanding their personal genome data. So, I think it's amply possi...3914 days ago
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Python script to download covid genome !
#!/usr/bin/env python3 # these are the publicly available "complete" sequences # http...ad().split("\n")[1:] allseq[nm] = ''.join(dna) import json with open("data/allseq.json", "w") as f: j...1133 days ago
Which of the followings are the best place to study Bioinformatics ?
Bioinformatics is a major growth area and qualified Bioinforma...ians are in high demand. An explosion in biological data has resulted from genome proj...tics provides the tools to analyse and exploit such data sets.Can you please suggest m...3414 days ago
At what age did you gain passion in Bioinformatics?
Most of the bioinformatician were biologist ( yeah ... not all ;), and at later stage they gain a passion in Bioinformatics and learn it. When did you get inclined towards computational analysis of biological data?3236 days ago
Tryst with a Bioinformatician # Dr Altan Kara
Dr Altan Kara is a Bioinformatics specia...ting the globally produced biological data to derivate unified solutions...rison of high-throughput experimental data in an integrated manner and b...m? With the increasing amount of data in databases, there is alread...2359 days ago
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Structure of Binary files used for storing sequencing data-bam and sff
Many times bioinformatician needs to parse binary files like bam and sff. Advantage of binary files is that they occupy less space in memory with maximum information content. Link for those who looking for structure of Bam and sff file: Bam: http://samtools.sourceforge.net/SAMv1.pdf (from...Tags: bam, sff, sam, iontorrent data, 454 data, pyrosequencing data, hxd, hexadecimal, binary files, sequencing
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Comment on "Short-read assembly using Spades !"
...hort-read assembly. It can assemble reads generated from Illumina, IonTorrent, PacBio, and Oxford Nanopore...inux, macOS, and Windows operating systems. Prepare the input data: The input data should be in FASTQ format, wh...418 days ago