Results for "isolates"
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SPAdes – St. Petersburg genome assembler – is intended for both standard isolates and single-cell MDA bacteria assemblies. This manual will help you to install and run SPAd...2951 days ago
- CheckM provides a set of tools for assessing the quality of genomes recovered from isolates, single cells, or metagenomes. It provides robust estimates of genome completeness and conta...
2187 days ago
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- ...h;St. Petersburg genome Assembler—was originally developed for de novo assembly of genome sequencing data produced for cultivated microbial isolates and for single-cell genomic D...
837 days ago
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Awesome perl frameworks, libraries and software - PART 3
...he fly apenwarr/gitbuilder - Auto-builds and tests all the branches of your git projects, showing pass/fail results on a web page/RSS feed. Isolates failures to the first commit...2507 days ago
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Genome Assembly Tools and Software - PART1 !!
...encing datasets. SPAdes 3.6.2 – Single-cell Genome Assembler SPAdes (St. Petersburg genome assembler) is intended for both standard isolates and single-cell MDA bacteria...2699 days ago
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- ...ta. An important part of the generated data that underlies this project consists of high-throughput sequencing of DNA and mRNA of populations and isolates. For answering specific quest...
3962 days ago
Marie Curie PhD position available immediately
...ools will be validated, intraspecific phenotypic diversity (biofilm and virulence) will be assessed on a collection of environmental and clinical isolates of L. monocytogenes. Genotypi...3312 days ago
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- CheckM provides a set of tools for assessing the quality of genomes recovered from isolates, single cells, or metagenomes. It provides robust estimates of genome completeness and contamination by using collocated sets of genes that are ubiquitous and single-copy within a phylogenetic lineage. Ass...
Tags: CheckM, Assessing, quality, microbial, genomes, recovered, isolates, single, cells, metagenomes, Validation
2187 days ago
multiPhATE: bioinformatics pipeline for functional annotation of phage isolates
multiple-genome Phage Annotation Toolkit and Evaluator (multiPhATE). multiPhATE is a throughput pipeline driver that invokes an annotation pipeline (PhATE) across a user-specified set of phage genomes. This tool incorporates a de novo phage gene-calling algorithm and assigns putative fu...Tags: multiPhATE, bioinformatics, pipeline, functional, annotation, phage, isolates
1830 days ago
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Comment on "Coronavirus Resources !"
Raw and assembled sequences related to the COVID-19 outbreak, including outbreak isolates and records relating to coronavirus biology. Includes extensive sampling information. https://www.covid19dataportal.org/sequences?db=embl1437 days ago
