BOL: Results for "kraken"

Results for "kraken"

- Neelam Jha@neelam
Frequently used bioinformatics tools for viral genome analysis !
...67 (2012). KMC: Disk-based k-mer counting on a PC. Deorowicz, S., Debudaj-Grabysz, A. & Grabowski, S. BMC Bioinformatics 14, 160 (2013). Kraken: Kraken: ultrafast metagenomic sequen...
1041 days ago
- Surabhi Chaudhary@surabhi
Illumina based assembly pipeline steps !
Illumina Merge re-sequenced FastQ files (cat) Read QC (FastQC) Adapter trimming (fastp) Removal of host reads (Kraken 2; optional) Variant calling Read alignment (Bowtie 2) S...
871 days ago

- Jit@jit.aber
Kraken: ultrafast metagenomic sequence classification using exact alignments
Kraken is an ultrafast and highly accurate program for ass...metagenomic data. Using exact alignment of k-mers, Kraken achieves classification accur...to the fastest BLAST program. In its fastest mode, Kraken classifies 100 base pair read...
2863 days ago
- Jit@jit.aber
Metagenomics assembly workshop !!
...sembly Gene Prediction Assembly Evaluation Read Mapping MetaQUAST Binning MaxBin Binning MetaBAT Binning Classification Kraken Taxonomic Sequence Classifica...
2568 days ago
+1 more Bookmarks

- Abhimanyu Singh@abhimanyu
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...ty-reduction technique) Software (C++) https://github.com/marbl/mash Kraken Taxonomic assignment in meta...hensive sequence database Software (C++) https://ccb.jhu.edu/software/kraken/ LMAT Assignment of taxonom...
2365 days ago

- Jit@jit.aber
A universal genomic coordinate translator for comparative genomics http://nedaz.github.io/kraken/ #NGS #Coordinate #Translator
3347 days ago
- Abhinav@abhinav
A universal genomic #coordinate translator for comparative genomics https://github.com/nedaz/kraken #Genes #Translator #Synteny
2946 days ago
+1 more Wire posts

- Shruti Paniwala@shruti
Install kraken on linux
...added / updated specs: - kraken The following packages w...3.1 MB bioconda kraken-1.1 | h...ellyfish-1.1.12-h6bb024c_1 kraken bioconda/linux-64...------|----------------- kraken-0.10.6_eaf8fb68 |...
1456 days ago
- Jit@jit.aber
Download minikraken database !
...ftp://ftp.ccb.jhu.edu/pub/data/kraken2_dbs/old/minikraken2_v2_8GB_201904.tgz % Total...M (JitMetaENV) ➜ day3 ls minikraken2_v2_8GB_201904.tgz (JitMetaE...tMetaENV) ➜ krakenDB mv ../minikraken2_v2_8GB_201904.tgz . (JitMet...ed.unmapped.R2.fastq.gz > evol1.kraken
1208 days ago
+1 more Bio-Scripts

- Jit@jit.aber
Comment on "AfterQC: Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data"
...one application or it can be integrated into a larger pipeline solution. fastqp fastqp. Simple FASTQ quality assessment using Python. Kraken kraken:A set of tools for quality co...
2131 days ago