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DISCO is a multi threaded and multiprocess distributed memory overlap-layout-consensus (OLC) metagenome assembler. Disco was developed as a scalable assembler to assemble large m...2483 days ago
miniasm: very fast OLC-based de novo assembler for noisy long reads
...h3/miniasm && (cd miniasm && make) # Overlap minimap/minimap -Sw5 -L100 -m0 -t8 reads.fq reads.fq | gzip -1 > reads.paf.gz # Layout miniasm/miniasm -f reads.fq...2343 days ago
Ra assembler - a de novo DNA assembler for third generation sequencing data
...ensitive and specific overlapper ("graphmap -w owler", https://github.com/isovic/graphmap) and constructing and reducing an overlap graph (Ra layout, https://github.com/mari...2312 days ago
HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution
...ontent/27/5/747.full An ipython notebook to reproduce results in the paper can be found in this repository. HINGE is an OLC(Overlap-Layout-Consensus) assembler. The ide...2271 days ago
circosJS: d3 library to build circular graphs
Circos is a javascript library to easily build interactive graphs in a circular layout. It's based on d3.js. It aims to be a javascript version of the Circos software. You should consider using Circos to show: relationships between entities periodical data2265 days ago
Genome U-Plot: a whole genome visualization
...potheses by visualizing SVs such as deletions, amplifications, and chromoanagenesis events. The main features of the Genome U-Plot are its layered layout, its high spatial resolution...2115 days ago
BAUM – Improving Genome Assembly by Adaptive Unique Mapping and Local Overlap-Layout-Consensus
BAUM, breaks the whole genome into regions by adaptive unique mapping; then the local OLC is used to assemble each region in parallel. BAUM can: (1) perform reference-a...2011 days ago
UpSetR: An R Package for the Visualization of Intersecting Sets and their Properties
...bsp;plots. The UpSet technique visualizes set intersections in a matrix layout and introduces aggregates based on groupings and queries. The matrix layout enables the effective represe...1916 days ago
U-Plot: Genome U-Plot sample implementation
The Genome U-Plot is a JavaScript tool to visualize Chromosomal abnormalities in the Human Genome using a U-shape layout.1516 days ago
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