Results for "line"
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List of Bioinformatics and Computational Biology Journals
...e Artificial Intelligence Machine Learning Applied Bioinformatics Applied Genomics and Proteomics BMC Bioinformatics Online Journal of Bioinformatics (OJB) PSB On-Line Proceedings Bioinformatics:...3740 days ago
Best book Titles for Learning Bionformatics
...uldn’t know anything that we know today. There are several book, online and offile to read and I can'...on: Bioinfomatic Approach, I.F. Tsigelny, 2002, International University Line Introduction to Protein Arch...3930 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...an automated de novo transcriptome assembly pipeline from stranded RNA-Seq reads....2, 2010 Full Text [describes Trans-ABySS, a pipeline to use the ABySS parallel ass...et al., Nat Genet 43(5):491-8, 2011. PubMed Online resources The R statistical...3792 days ago
List of In-silico Binding Site Prediction Tools
...pography of proteins (CASTp) provides an online resource for locating, delineating and measuring concave su...target structures. PocketDepth: http://proline.physics.iisc.ernet.in/pocketd...uage and is currently available as command line driven program. A GUI is in d...3757 days ago
Perl one-liner for bioinformatician !!!
...nowing a little bit of Perl onliner is extremely helpful. Perl one-liners are small and awesome Perl...once, and many more. Perl one-liners will make you the shell war...mber and print only non-empty lines in a fileperl -pe '$_ = ++$a...s|\n|\r\n|' #Convert unix new lines into DOS new lines:perl -pe...3641 days ago
- ...t to be easily dropped into the middle of a pipeline for format conversion. Reform...exact number of reads or bases) Changing fasta line-wrapping length Reverse-compl...ional flag "-Xmx2g". For example, to change the line-wrapping length on the human...
2726 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...other NCBI resources; command-line or via web, can fetch data from a URL, build custom pipeline/ workflow has sra.dnanexus.co...ta; python module or command- line program; Input: tab- delimin...n released July 2015; Command-line program; used for studying no...2921 days ago
Tools for Searching Repeats And Palindromic Sequences
...TransposonsRetrovirus RetrotransposonsNon-Retrovirus Retrotransposons ( LINES ) Currently up to 50% of th...s (see B.6.22. Applications in group Nucleic:repeats). There are many on-line services providing the EMBOSS...2224 days ago
- ...sp; head file — output the first 10 lines of file tail file — output the last 10 lines of file ta...rch recursively for pattern in dir and show the line number found ...
2887 days ago
Tool: Gene Set Clustering based on Functional annotation (GeneSCF)
...tering based on Functional annotation GeneSCF serves as command line tool for clustering the list...n real-time (v1.1 and above) by accessing source databases. With command-line versions of tools, as you kno...2884 days ago
