Results for "line"
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Comment on "Short-read assembly using Spades !"
...tools such as Trimmomatic or FastQC. Running SPAdes: After quality control, the next step is to run SPAdes. This can be done through a command-line interface or a graphical user...466 days ago
Comment on "Tools for Sequence translation !"
...andle multiple sequences at once. EMBOSS Transeq: This is a command-line tool that can translate nucle...or RNA sequences into protein sequences. SeqKit: This is a command-line tool that can perform several...471 days ago
Comment on "Basic command-line to run BLAST"
...m the search: Once the query sequence and parameters have been set, the BLAST search can be run. This can be done online using the NCBI BLAST website or locally using the command-line interface. Interpret the...474 days ago
Comment on "Fix rewritable error of ELGG !"
...rt apache2 Now, create an .htaccess file in the web root. sudo nano /var/www/html/.htaccess Add this line at the top of the new file to...762 days ago
Comment on "ncbi-datasets-cli -- Quickstart: command line tools !"
...LS]$ curl -o datasets 'https://ftp.ncbi.nlm.nih.gov/pub/datasets/command-line/LATEST/linux-amd64/datasets'...]$ curl -o dataformat 'https://ftp.ncbi.nlm.nih.gov/pub/datasets/command-line/LATEST/linux-amd64/dataformat...931 days ago
- ...check the software usage and available command line options. $ ./fastANI -h...g directory paths to reference genomes, one per line. Many to Many. When t...are files containing paths to genomes, one per line....
1152 days ago
Comment on "Sibelia: A comparative genomics tool"
...enomes_permutations.txt". This file contains input sequences represented as permutations of the synteny block. It has two lines for each input sequence: 1. Header line -- FASTA header of the sequen...1336 days ago
- ...p;mode to output plaintext abundance estimates. Alternatively, kallisto h5dump can be used to output an HDF5 file to plaintext. The first line contains a header for each co...
1412 days ago
Comment on "List of gene ontology software and tools"
GeneSCF serves as command line tool for clustering list of genes based on functional annotation (Geneontology, KEGG, REACTOME and NCG). This tool requires gene list in the form of Entrez Gene IDs or Official gene symbols as a input. http://genescf.kandurilab.org/1543 days ago
- ...nbsp; featureDisplayMode [-expanded | -collapsed | -oneline] [-v] [track_regex = .*]...&n...nbsp; Set track height to INT lines of text for all tracks match...
1571 days ago
