1674 days ago
Bioinformatics web development course
...development course, targeted at Biology and Bioinformatics students, aims at teaching from scratch all the skills needed to setup a fully working Linux web server and to develop and...1640 days ago
ngs-bits - Short-read sequencing tools
Binaries of ngs-bits are available via Bioconda. Alternatively, ngs-bits can be built from sources: Binaries for Linux/macOS From sources for Linux/macOS From sources for Windows1569 days ago
gapFinisher: A reliable gap filling pipeline for SSPACE-LongRead scaffolder output
gapFinisher is based on the controlled use of a previously published gap filling tool FGAP and works on all standard Linux/UNIX command lines. They compare the performance of gapFini...1562 days ago
FastGT: an alignment-free method for calling common SNVs directly from raw sequencing reads
...ants directly from raw sequencing reads. It is written in C and runs in Linux. FastGT uses a list of varian...dicts the genotype. All this takes less than 1 hour on average low-cost Linux server. http://bioinfo.ut.ee...1558 days ago
gapFinisher: A reliable gap filling pipeline for SSPACE-LongRead scaffolder output
gapFinisher to process SSPACE-LongRead output to fill gaps after the scaffolding. gapFinisher is based on the controlled use of a previously published gap filling tool FGAP and works on all standard Linux/UNIX command lines. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6733440/1450 days ago
sunbeam: A robust, extensible metagenomics pipeline
...sis. It uses conda to manage dependencies, so it doesn't have pre-existing dependencies or admin privileges, and can be deployed on most Linux workstations and clusters. To...1416 days ago
1206 days ago
MMseqs2: ultra fast and sensitive sequence search and clustering suite
...oftware suite to search and cluster huge protein and nucleotide sequence sets. MMseqs2 is open source GPL-licensed software implemented in C++ for Linux, MacOS, and (as beta version,...1202 days ago
Ktrim: an extra-fast and accurate adapter- and quality-trimmer for sequencing data
Ktrim is written in C++ for GNU Linux/Unix platforms. After uncompr...nbsp;and linked with libz v1.2.7 for Linux x86_64 system. If you could n...system, you can re-compile the programs: user@linux$ make clean && make1177 days ago